View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10914_low_4 (Length: 402)

Name: NF10914_low_4
Description: NF10914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10914_low_4
NF10914_low_4
[»] chr4 (32 HSPs)
chr4 (151-402)||(1194238-1194488)
chr4 (5-145)||(10352902-10353038)
chr4 (3-145)||(30077647-30077785)
chr4 (1-145)||(36382360-36382499)
chr4 (1-145)||(3292910-3293050)
chr4 (1-145)||(30216756-30216896)
chr4 (1-145)||(50205091-50205231)
chr4 (5-138)||(42333794-42333923)
chr4 (1-138)||(44156671-44156804)
chr4 (1-145)||(13012201-13012341)
chr4 (5-145)||(43143602-43143738)
chr4 (1-130)||(29995997-29996122)
chr4 (1-130)||(48989356-48989481)
chr4 (1-145)||(6690249-6690389)
chr4 (1-123)||(1817752-1817870)
chr4 (1-145)||(20129323-20129463)
chr4 (1-145)||(25930721-25930861)
chr4 (1-145)||(28877264-28877404)
chr4 (1-145)||(47500786-47500926)
chr4 (1-130)||(40529043-40529168)
chr4 (1-130)||(17511247-17511373)
chr4 (1-130)||(26448081-26448205)
chr4 (1-136)||(29319719-29319850)
chr4 (1-99)||(6235579-6235673)
chr4 (1-74)||(13392895-13392968)
chr4 (1-74)||(13396034-13396107)
chr4 (1-145)||(26439293-26439433)
chr4 (1-145)||(34407298-34407438)
chr4 (1-144)||(43355918-43356057)
chr4 (1-74)||(35546033-35546106)
chr4 (28-145)||(30109969-30110084)
chr4 (58-138)||(48129986-48130062)
[»] chr6 (9 HSPs)
chr6 (3-138)||(29743303-29743434)
chr6 (1-145)||(28996743-28996883)
chr6 (1-138)||(33229350-33229483)
chr6 (1-145)||(398630-398770)
chr6 (1-143)||(13837836-13837974)
chr6 (1-145)||(18339119-18339259)
chr6 (1-145)||(34948772-34948912)
chr6 (76-130)||(31028449-31028503)
chr6 (76-143)||(24697902-24697969)
[»] chr3 (16 HSPs)
chr3 (3-145)||(19565517-19565655)
chr3 (3-145)||(45335888-45336025)
chr3 (1-145)||(6930908-6931048)
chr3 (1-145)||(34084136-34084276)
chr3 (1-145)||(33040966-33041106)
chr3 (1-145)||(45182994-45183134)
chr3 (1-144)||(27935192-27935331)
chr3 (1-130)||(6269440-6269565)
chr3 (1-130)||(19390174-19390299)
chr3 (5-145)||(11018230-11018366)
chr3 (1-138)||(22968458-22968591)
chr3 (1-138)||(35514286-35514415)
chr3 (1-146)||(40081755-40081894)
chr3 (1-145)||(39771803-39771943)
chr3 (5-145)||(6503587-6503723)
chr3 (28-136)||(5135291-5135397)
[»] chr7 (17 HSPs)
chr7 (6-145)||(34389075-34389210)
chr7 (1-127)||(38638250-38638372)
chr7 (1-138)||(40920017-40920150)
chr7 (1-145)||(14777121-14777261)
chr7 (1-145)||(36630829-36630969)
chr7 (1-145)||(3114110-3114250)
chr7 (1-145)||(8394138-8394278)
chr7 (1-129)||(26624775-26624899)
chr7 (1-145)||(35090181-35090321)
chr7 (1-145)||(37002158-37002298)
chr7 (1-145)||(5555500-5555640)
chr7 (1-144)||(33685578-33685717)
chr7 (1-145)||(8867745-8867885)
chr7 (1-145)||(43184482-43184622)
chr7 (1-130)||(36658209-36658334)
chr7 (1-74)||(7002805-7002878)
chr7 (1-74)||(7048676-7048749)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-138)||(52945-53078)
[»] chr5 (20 HSPs)
chr5 (1-138)||(43068897-43069030)
chr5 (1-145)||(13817990-13818130)
chr5 (1-145)||(26283332-26283472)
chr5 (1-145)||(37254654-37254794)
chr5 (1-145)||(39657520-39657660)
chr5 (1-144)||(33430335-33430474)
chr5 (1-143)||(10033942-10034080)
chr5 (1-145)||(12278874-12279014)
chr5 (1-145)||(31680380-31680520)
chr5 (2-145)||(1776391-1776530)
chr5 (1-128)||(16333890-16334013)
chr5 (3-145)||(3155647-3155785)
chr5 (1-143)||(17332565-17332703)
chr5 (1-138)||(31501730-31501863)
chr5 (1-126)||(36291403-36291524)
chr5 (1-138)||(16155017-16155150)
chr5 (1-130)||(36293635-36293760)
chr5 (1-145)||(39434709-39434849)
chr5 (1-135)||(19985962-19986092)
chr5 (28-145)||(28801300-28801415)
[»] chr8 (13 HSPs)
chr8 (1-145)||(36408564-36408704)
chr8 (5-145)||(34136843-34136979)
chr8 (1-138)||(15838306-15838438)
chr8 (1-145)||(29728400-29728540)
chr8 (5-145)||(4404021-4404157)
chr8 (1-145)||(16788039-16788179)
chr8 (1-145)||(23402121-23402261)
chr8 (1-144)||(3648808-3648947)
chr8 (1-136)||(9877242-9877373)
chr8 (1-145)||(39914528-39914667)
chr8 (1-126)||(42230971-42231090)
chr8 (1-138)||(2729210-2729343)
chr8 (28-130)||(3435297-3435397)
[»] chr2 (19 HSPs)
chr2 (1-145)||(771012-771152)
chr2 (1-145)||(6403818-6403958)
chr2 (1-145)||(16405613-16405753)
chr2 (1-145)||(45418596-45418736)
chr2 (1-144)||(44084617-44084756)
chr2 (1-145)||(41251648-41251788)
chr2 (1-145)||(42439999-42440139)
chr2 (1-138)||(35962735-35962868)
chr2 (1-130)||(2285890-2286015)
chr2 (1-145)||(8147364-8147505)
chr2 (1-130)||(12756851-12756976)
chr2 (1-145)||(32127155-32127295)
chr2 (5-136)||(8059351-8059478)
chr2 (4-138)||(18981636-18981766)
chr2 (1-145)||(17445055-17445193)
chr2 (1-145)||(31581636-31581776)
chr2 (1-138)||(26162716-26162846)
chr2 (17-138)||(2958131-2958247)
chr2 (28-130)||(4555250-4555350)
[»] chr1 (10 HSPs)
chr1 (1-145)||(3828997-3829136)
chr1 (1-145)||(17445326-17445466)
chr1 (1-145)||(26144268-26144408)
chr1 (1-145)||(32982070-32982210)
chr1 (1-138)||(321391-321524)
chr1 (1-145)||(35907565-35907705)
chr1 (1-143)||(42310955-42311093)
chr1 (1-145)||(7433458-7433598)
chr1 (28-136)||(41972314-41972420)
chr1 (48-116)||(23313281-23313345)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-145)||(535-675)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-145)||(31493-31633)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-145)||(480471-480611)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-145)||(5243-5383)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-138)||(17862-17995)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 151 - 402
Target Start/End: Complemental strand, 1194488 - 1194238
Alignment:
Q  151 acaatgaagggagaagaagtttaagaaacaaactgattatttgaagaaggaacaacaaatttgtcaagcagggcaacccctttttctaatggcgtttcag 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1194488 acaatgaagggagaagaagtttaagaaacaaactgattatttgaagaagcaacaacaaatttgtcaagcagggcaacccctttttctaatggcgtttcag 1194389  T
Q  251 agtgttaagttcaaggaagattagtgcttttacaaataatagaggggaagtgaatgtcattttgataaaatttaggggagtcgatataatttactctgan 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1194388 agtgttaagttcaaggaagattagtgcttttacaaataatagaggggaagtgaatgtcattttgataaaatttaggggagtcgatataatttactctgat 1194289  T
Q  351 nnnnnnngatttaaatgcacttttttctctatcttttaaaatgttgtgattt 402  Q
            ||||||||| ||||||||||||||||||||||||||||| ||||    
T  1194288 tttattt-atttaaatgtacttttttctctatcttttaaaatgttgtaattt 1194238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 10352902 - 10353038
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    ||||||||||||||||| |||||||||||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttcctt----ttgtaaatgtgttaatggactttttggtt 10352997  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    || ||||||||| ||||||||||||||||||||| ||||||    
T  10352998 gggtctaatgtgcaaaaattatcgattgagcccgggcgacc 10353038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 30077647 - 30077785
Alignment:
Q  3 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttgg 102  Q
    ||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  30077647 tagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttcttt----ttgtaaatgtgttaatgaactttttgg 30077742  T
Q  103 ttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||| ||||||||| |||| |||||||||||||| | ||||||    
T  30077743 ttgggtctaatgtgcaaaatttatcgattgagcctgggcgacc 30077785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36382360 - 36382499
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||     ||||||||||||||||| |||||||    
T  36382360 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctt-----ttgtaaatgtgttaatggacttttt 36382454  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  | ||||||| ||||||||| ||| ||||||| ||||||    
T  36382455 ggttgagtttaatgtgcaaaaattatggatcgagcccgggcgacc 36382499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 3292910 - 3293050
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  3292910 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 3293005  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||| | ||||||||||||| ||||||| ||||||    
T  3293006 ggttgggtctaatgggcaaaaattatcgatcgagcccgggcgacc 3293050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 30216756 - 30216896
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||    |||||| ||||||||| | |||||     
T  30216756 aatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattagcttttg 30216851  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||||||    
T  30216852 ggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgacc 30216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 50205091 - 50205231
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||    |||||| |||||||||   |||||     
T  50205091 aatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttcttt----ttgtaagtgtgttaattggcttttg 50205186  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||    
T  50205187 ggttggatctaatgtgcaaaaattatcgatcgagctcgggcgacc 50205231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 42333794 - 42333923
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   ||||| ||||    
T  42333794 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttgggtt 42333889  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |  ||||||||| |||||||||||||||||||||    
T  42333890 gagtctaatgtgcaaaaattatcgattgagcccg 42333923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 44156804 - 44156671
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    |||||| |||||||||   |||||     
T  44156804 aatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttcttt----ttgtaagtgtgttaattggcttttg 44156709  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||| ||||||||| ||||||||||| |||||||||    
T  44156708 ggttgggtctaatgtgcaaaaattatcggttgagcccg 44156671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13012341 - 13012201
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||||     ||||||||||||||| ||||||    
T  13012341 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta----taaatgtgttaatgagcttttt 13012246  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||| |||||||||| ||||||||||||| ||||||| ||||||    
T  13012245 ggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgacc 13012201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 43143602 - 43143738
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   ||||| ||||    
T  43143602 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttgggtt 43143697  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |  ||||||||| ||||||||||||| ||||||| ||||||    
T  43143698 gagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 43143738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 29995997 - 29996122
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||    | ||||||||||||||| |||||||    
T  29995997 aatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttt----tcgtaaatgtgttaatggacttttt 29996092  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||  ||||||||  |||||||||||||    
T  29996093 ggttgagtctaatgtacaaaaattatcgat 29996122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 48989481 - 48989356
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||    |||||| |||||||||| ||||||     
T  48989481 aatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaatggacttttg 48989386  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
     ||||| | ||||||| |||||||||||||    
T  48989385 agttgggtttaatgtgcaaaaattatcgat 48989356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6690249 - 6690389
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||    |||||| |||||||||   |||||     
T  6690249 aatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 6690344  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||| | ||||||||||||| ||||||| ||||||    
T  6690345 ggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgacc 6690389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1817870 - 1817752
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||     ||||||| |||||| ||||||     
T  1817870 aatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttcttttta----taaatgtattaatggacttttg 1817775  T
Q  101 ggttggatctaatgtgtaaaaat 123  Q
    | |||||||||||||| ||||||    
T  1817774 gattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 20129463 - 20129323
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||  |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  20129463 aatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 20129368  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  20129367 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 20129323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 25930861 - 25930721
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||| |||| ||||||||||||||    |||||||||||||||||  |||||     
T  25930861 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 25930766  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  | ||||||| ||||||||| ||| ||||||| ||||||    
T  25930765 ggttgagtttaatgtgcaaaaattatagatcgagcccgggcgacc 25930721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 28877264 - 28877404
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||    || |||  |||||||| | |||||     
T  28877264 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttcttt----ttataagcgtgttaattagctttta 28877359  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||| |||||||||| |||||||||||||  ||||| |||||||    
T  28877360 ggttgaatctaatgtgcaaaaattatcgatctagcccaagcgacc 28877404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 47500926 - 47500786
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||    |  ||||||||||||||| ||||||    
T  47500926 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttt----tcataaatgtgttaatgagcttttt 47500831  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  47500830 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 47500786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 40529168 - 40529043
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||| ||| | |||||||| |||||||||||||||||||    ||||||||||||||||||  ||||     
T  40529168 aatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttcttt----ttgtaaatgtgttaatgagttttta 40529073  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||  | ||||||| |||||||||||||    
T  40529072 ggttgagtttaatgtgcaaaaattatcgat 40529043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 17511247 - 17511373
Alignment:
Q  1 aatagtgtgctaaataaaatt-ccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttt 99  Q
    |||| |||||||||||||||| || |||||||||||||||||| |||||||| |||| ||||||||||||||    |||||||||||||||||  |||||    
T  17511247 aataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttcttt----ttgtaaatgtgttaatgggctttt 17511342  T
Q  100 tggttggatctaatgtgtaaaaattatcgat 130  Q
     |||||  ||||||||| |||||||||||||    
T  17511343 gggttgagtctaatgtgcaaaaattatcgat 17511373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 26448205 - 26448081
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||||| ||||||||| || | ||||||||||||||| |||||||||| ||     |||||| |||||||||| ||||||     
T  26448205 aatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaatttttttt-----ttgtaagtgtgttaatggacttttg 26448111  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||| ||| ||||||| |||||||||||||    
T  26448110 ggttagatttaatgtgcaaaaattatcgat 26448081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 29319719 - 29319850
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||| |||||| |||| | |||||||||||||  |||||||||||||    |||||||||||||||||   ||||     
T  29319719 aatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttcttt----ttgtaaatgtgttaatgggattttg 29319814  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcc 136  Q
    |||||  ||||||||| ||||||||||||| |||||    
T  29319815 ggttgagtctaatgtgcaaaaattatcgatcgagcc 29319850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6235673 - 6235579
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttt 99  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||| |||| ||||||||||||||    ||||||||||||||||| ||||||    
T  6235673 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttcttt----ttgtaaatgtgttaatggactttt 6235579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13392895 - 13392968
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttg 74  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  13392895 aatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttg 13392968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13396034 - 13396107
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttg 74  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||    
T  13396034 aatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttg 13396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26439293 - 26439433
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||  |||||||||| | |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||  |||||     
T  26439293 aatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgggcttttg 26439388  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||  ||||||| ||||||    
T  26439389 ggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgacc 26439433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34407298 - 34407438
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||  |||||||||| | |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||  |||||     
T  34407298 aatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgggcttttg 34407393  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||  ||||||| ||||||    
T  34407394 ggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgacc 34407438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 43356057 - 43355918
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||  |||||||||| | |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||  |||||     
T  43356057 aatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgggcttttg 43355962  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    |||||  ||||||||| ||||||||||||  ||||||| |||||    
T  43355961 ggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgac 43355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35546106 - 35546033
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttg 74  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| ||||| |||||||||||    
T  35546106 aatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttg 35546033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 30110084 - 30109969
Alignment:
Q  28 cctatttgcgtgtaagaattttcagatt--gtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    ||||||||||||| ||| |||||| |||  |||||||||||||||||||    ||| ||||||||||  ||||  | |||| ||||||||| ||||||||    
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttg----taagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaatta 30109989  T
Q  126 tcgattgagcccgagcgacc 145  Q
    ||||| ||| ||| ||||||    
T  30109988 tcgatcgagtccgggcgacc 30109969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 48130062 - 48129986
Alignment:
Q  58 ccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||||||||||||||    ||| ||||||||||| ||||| |||||| |||||| || ||||||||||||| |||||||    
T  48130062 ccaaatttttctttttg----taagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccg 48129986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 29743434 - 29743303
Alignment:
Q  3 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     ||||||||||||||||||||||||||    
T  29743434 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttcttt----ctgtaaatgtgttaatgaactttttgg 29743339  T
Q  103 ttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||| ||||||||| |||||||||||||||||||||    
T  29743338 ttgggtctaatgtgcaaaaattatcgattgagcccg 29743303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 28996883 - 28996743
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  28996883 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgactttta 28996788  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||| | ||||||||||||| |||| || ||||||    
T  28996787 ggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgacc 28996743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 33229350 - 33229483
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||     ||||||||||||| ||||||     
T  33229350 aatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttgg----aaatgtgttaatggacttttg 33229445  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||| ||||||||  |||||| |||||| |||||||    
T  33229446 ggttgggtctaatgtacaaaaatgatcgatcgagcccg 33229483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 398770 - 398630
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||||     ||||||||||||||| ||||||    
T  398770 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta----taaatgtgttaatgagcttttt 398675  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  398674 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 398630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13837974 - 13837836
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    ||||||||||||| |||  |||||     
T  13837974 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttgatgtgcttttg 13837879  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcga 143  Q
    |||||  ||||||||  ||||||||||||| || |||||||||    
T  13837878 ggttgagtctaatgtacaaaaattatcgatcgaacccgagcga 13837836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18339259 - 18339119
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||    |||||| |||||||||   |||||     
T  18339259 aatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttcttt----ttgtaagtgtgttaattggctttta 18339164  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    | |||| ||||||||| ||||||||| ||| ||||||| ||||||    
T  18339163 gattgggtctaatgtgcaaaaattattgatcgagcccgggcgacc 18339119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34948772 - 34948912
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| | ||| ||||||| |||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  34948772 aatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 34948867  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||| | ||||||    
T  34948868 ggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgacc 34948912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 31028449 - 31028503
Alignment:
Q  76 ttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  31028449 ttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgat 31028503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 24697902 - 24697969
Alignment:
Q  76 ttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaattatcgattgagcccgagcga 143  Q
    |||||| ||||||||||  ||||| ||||||  |||||||| ||||||||||||||||||||| ||||    
T  24697902 ttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcga 24697969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 19565517 - 19565655
Alignment:
Q  3 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttgg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| | |||||||    
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttcttt----ttgtaaatgtgttaatggattttttgg 19565612  T
Q  103 ttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||| ||||||||| |||||||||||||||| |||| ||||||    
T  19565613 ttgggtctaatgtgcaaaaattatcgattgaacccgggcgacc 19565655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 45336025 - 45335888
Alignment:
Q  3 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttgg 102  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    ||||||||||||||||| |||||||||    
T  45336025 tagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttcttt----ttgtaaatgtgttaatg-actttttgg 45335931  T
Q  103 ttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||    
T  45335930 ttgggtctaatgtgtaaaaattatcgattgagtccgggcgacc 45335888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6930908 - 6931048
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||    ||||||||||||||||   |||||     
T  6930908 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttcttt----ttgtaaatgtgttaattggcttttg 6931003  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||    
T  6931004 ggttggatctaatgcgcaaaaattatcgatcgagcccgggcgacc 6931048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 34084136 - 34084276
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||||| |||| ||||||||||||||    ||||||||||||||||| |||||||    
T  34084136 aatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttcttt----ttgtaaatgtgttaatggacttttt 34084231  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||| || ||||||| ||||||||||||| ||| ||| ||||||    
T  34084232 ggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgacc 34084276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 33041106 - 33040966
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||    |||||| ||||||||| | |||||     
T  33041106 aatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttcttt----ttgtaagtgtgttaattagcttttg 33041011  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| |||||| || |||||||||| || ||||||||||||||    
T  33041010 ggttgggtctaatatgcaaaaattatcaatcgagcccgagcgacc 33040966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 45183134 - 45182994
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  45183134 aatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 45183039  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||| | ||||||||||||| ||||||| ||||||    
T  45183038 ggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgacc 45182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 27935331 - 27935192
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    |||||| ||||||||||| |||||     
T  27935331 aatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaatgagcttttg 27935236  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    |||||| | ||||||| ||||||||||||| ||||||| |||||    
T  27935235 ggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgac 27935192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6269440 - 6269565
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  6269440 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 6269535  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||  ||||||||| |||||||||||||    
T  6269536 ggttgagtctaatgtgcaaaaattatcgat 6269565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19390299 - 19390174
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    ||||||||||||||||  ||||||     
T  19390299 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatagactttta 19390204  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||  ||||||||| |||||||||||||    
T  19390203 ggttgagtctaatgtgcaaaaattatcgat 19390174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 11018230 - 11018366
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   ||||| ||||    
T  11018230 gtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttgggtt 11018325  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |  ||||||||| ||||||||||||| ||||| | ||||||    
T  11018326 gagtctaatgtgcaaaaattatcgatcgagcctgggcgacc 11018366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 22968458 - 22968591
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| | |||||||||| ||||| | |||||| |||||| ||||||||||||||    |||||||||||||||||  |||||     
T  22968458 aatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 22968553  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||   ||||||||| ||||||||||||| |||||||    
T  22968554 ggttaagtctaatgtgcaaaaattatcgatcgagcccg 22968591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35514415 - 35514286
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||        |||||||||| ||||||     
T  35514415 aatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttg--------tgtgttaatggacttttg 35514324  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||||||||| | ||  |||||||||||| |||||||    
T  35514323 ggttggatctagtatgcgaaaattatcgatcgagcccg 35514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 40081755 - 40081894
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||| ||||| || ||| |||||||||||| | |||||||| |||| ||||||||||||||    |||||||||||||||||| | ||||    
T  40081755 aatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttcttt----ttgtaaatgtgttaatgagc-tttt 40081848  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacct 146  Q
    |||||  ||||||||  ||||||||||||| ||||||| |||||||    
T  40081849 ggttgagtctaatgttcaaaaattatcgatcgagcccgggcgacct 40081894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39771943 - 39771803
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||  |||||||||| | |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||  |||||     
T  39771943 aatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgggcttttg 39771848  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||  ||||||| ||||||    
T  39771847 ggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgacc 39771803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 6503587 - 6503723
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    ||||||||||||||| |||||||||||||||| ||| |||||||||||||||   ||||||||||||    |||||| |||| ||||   ||||| ||||    
T  6503587 gtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttcttt----ttgtaagtgtgctaattggcttttgggtt 6503682  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |  |||||| || |||||| |||||| ||||||| ||||||    
T  6503683 gagtctaatttgcaaaaataatcgatcgagcccgggcgacc 6503723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 5135397 - 5135291
Alignment:
Q  28 cctatttgcgtgtaagaattttcagatt--gtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    |||||||| |||| ||||||||| ||||  |||||||||||||||||||    ||| ||||||||||| ||||| |||||| ||||||||  |||||| |    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttg----taagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataa 5135302  T
Q  126 tcgattgagcc 136  Q
    ||||| |||||    
T  5135301 tcgatcgagcc 5135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 34389075 - 34389210
Alignment:
Q  6 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttg 105  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| ||||||||| | ||||| |||||    
T  34389075 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattagcttttgggttg 34389170  T
Q  106 gatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    | ||||||||| ||||||||||||| ||||||| ||||||    
T  34389171 ggtctaatgtgcaaaaattatcgatcgagcccgggcgacc 34389210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 38638250 - 38638372
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  38638250 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttg 38638345  T
Q  101 ggttggatctaatgtgtaaaaattatc 127  Q
    |||||||||||||||| ||||||||||    
T  38638346 ggttggatctaatgtgcaaaaattatc 38638372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 40920017 - 40920150
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    ||||||||||||||||   |||||     
T  40920017 aatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttcttt----ttgtaaatgtgttaattggcttttg 40920112  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||  |||||||||| ||||||||||||| |||||||    
T  40920113 ggttaaatctaatgtgcaaaaattatcgatcgagcccg 40920150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14777121 - 14777261
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||| |||||     
T  14777121 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgagcttttg 14777216  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  14777217 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 14777261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 36630969 - 36630829
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    ||||||||||||||||| |||||||    
T  36630969 aatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatggacttttt 36630874  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  | ||||||| ||||||||||||| ||||||| ||||||    
T  36630873 ggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgacc 36630829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 3114110 - 3114250
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  3114110 aatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 3114205  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  3114206 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 3114250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 8394278 - 8394138
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||| ||    ||||||||||||||||| |||||||    
T  8394278 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcctt----ttgtaaatgtgttaatggacttttt 8394183  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  | ||||||| ||||||||||||| ||||||| ||||||    
T  8394182 ggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgacc 8394138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 26624899 - 26624775
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| ||||||||| |||||||     
T  26624899 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattaacttttg 26624804  T
Q  101 ggttggatctaatgtgtaaaaattatcga 129  Q
    | |||| |||||| || ||||||||||||    
T  26624803 gattgggtctaatatgcaaaaattatcga 26624775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 35090321 - 35090181
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    |||||| |||||||||   |||||     
T  35090321 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttcttt----ttgtaagtgtgttaattggcttttg 35090226  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| ||||||||| ||| ||||||| ||||||    
T  35090225 ggttgggtctaatgtgcaaaaattattgatcgagcccgggcgacc 35090181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 37002158 - 37002298
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  37002158 aatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttg 37002253  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    | |||| ||||||||| ||||||||||||| ||| |||| |||||    
T  37002254 gattgggtctaatgtgcaaaaattatcgatcgagaccgaacgacc 37002298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5555640 - 5555500
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||| ||||||||||||||    ||||||||| |||||||  |||||     
T  5555640 aatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgcgttaatgggcttttg 5555545  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  5555544 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 5555500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33685717 - 33685578
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||  ||||| ||||||||| | ||||||||||||||| ||||||||||||||    |||||| ||||||||||  |||||     
T  33685717 aatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaatgggcttttg 33685622  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    |||||| | ||||||| ||||||||||||| |||||||||||||    
T  33685621 ggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgac 33685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 8867745 - 8867885
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||    |||||||||| |||||   |||||     
T  8867745 aatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttcttt----ttgtaaatgtattaattggcttttg 8867840  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    | |||| |||||| || ||||||||||||| ||||||| ||||||    
T  8867841 gattgggtctaatatgcaaaaattatcgatcgagcccgggcgacc 8867885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 43184482 - 43184622
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| | |||||||   |||||     
T  43184482 aatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtatgttaattggcttttg 43184577  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||   ||| ||| ||||||||||||||| ||||||||||||||    
T  43184578 ggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgacc 43184622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 36658334 - 36658209
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | |||    |||||||   |||||     
T  36658334 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagta----tgttaattggcttttc 36658239  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||| || |||||| |||||||||||||    
T  36658238 ggttgggtccaatgtgcaaaaattatcgat 36658209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7002878 - 7002805
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttg 74  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  7002878 aatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttg 7002805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7048749 - 7048676
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttg 74  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  7048749 aatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttg 7048676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 53078 - 52945
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    ||||||||||||||||   |||||     
T  53078 aatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttcttt----ttgtaaatgtgttaattggcttttg 52983  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||  |||||||||| ||||||||||||| |||||||    
T  52982 ggttaaatctaatgtgcaaaaattatcgatcgagcccg 52945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 43069030 - 43068897
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||    ||||||||||||||||| ||||||     
T  43069030 aatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatggacttttg 43068935  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||| ||||||||| ||||||||| ||| |||||||    
T  43068934 ggttgggtctaatgtgaaaaaattattgatcgagcccg 43068897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13818130 - 13817990
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||| |||| |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  13818130 aatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 13818035  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||||||||||    
T  13818034 ggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgacc 13817990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26283332 - 26283472
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||||||||||    
T  26283332 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgaacttttt 26283427  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  26283428 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 26283472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 37254794 - 37254654
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  37254794 aataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttg 37254699  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| ||||||||||||| ||||| | ||||||    
T  37254698 ggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgacc 37254654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 39657520 - 39657660
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||| |||||     
T  39657520 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgagcttttg 39657615  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| |||||||||| || |||||||| |||||    
T  39657616 ggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgacc 39657660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 33430474 - 33430335
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  33430474 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 33430379  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    |||||| ||||||| | ||||||||||||| ||||||| |||||    
T  33430378 ggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 10034080 - 10033942
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  10034080 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 10033985  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcga 143  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||    
T  10033984 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 10033942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 12278874 - 12279014
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   | |||     
T  12278874 aatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcctttg 12278969  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| ||||||||||||| ||| ||| ||||||    
T  12278970 ggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgacc 12279014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 31680520 - 31680380
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  31680520 aatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 31680425  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||| | ||||||||||||| ||||||| ||||||    
T  31680424 ggttgggtctaatgcggaaaaattatcgatcgagcccgggcgacc 31680380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 1776391 - 1776530
Alignment:
Q  2 atagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttg 101  Q
    |||||||||||||||||||||| |||||||||||||||| | |||||||| |||| ||||||||||||||    ||||||||||||||||| ||||||||    
T  1776391 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttcttt----ttgtaaatgtgttaatggactttttg 1776486  T
Q  102 gttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||  | ||||||  ||||||||||||| ||||||| ||||||    
T  1776487 gttgactttaatgtacaaaaattatcgatcgagcccgggcgacc 1776530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16333890 - 16334013
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  16333890 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 16333985  T
Q  101 ggttggatctaatgtgtaaaaattatcg 128  Q
    ||||| |||||||||| |||||||||||    
T  16333986 ggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 3155647 - 3155785
Alignment:
Q  3 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttgg 102  Q
    ||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||     |||||||||||||| |||||| ||    
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttcttttta----taaatgtgttaatggacttttagg 3155742  T
Q  103 ttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||  || |||||| ||||||||| ||| ||||||||||||||    
T  3155743 ttgagtcgaatgtgcaaaaattattgatcgagcccgagcgacc 3155785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17332565 - 17332703
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  17332565 aatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 17332660  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcga 143  Q
    |||||| |||||| || ||||||||||||| ||||||| ||||    
T  17332661 ggttgggtctaatatgcaaaaattatcgatcgagcccgggcga 17332703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 31501730 - 31501863
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  31501730 aatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 31501825  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||| ||||||||| ||||||||||||| |||||||    
T  31501826 ggttgggtctaatgtgcaaaaattatcgatcgagcccg 31501863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 36291524 - 36291403
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||| |||||||||||| |||||||||||| |||||| |||||| |||||| ||||||||||||||    ||||||||||||||||||||||||     
T  36291524 aatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttcttt----ttgtaaatgtgttaatgaactttta 36291429  T
Q  101 ggttggatctaatgtgtaaaaattat 126  Q
    |||| ||||||||||| |||||||||    
T  36291428 ggttagatctaatgtgcaaaaattat 36291403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 16155150 - 16155017
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| | ||||||||||||||     ||||||||||||||  |||||     
T  16155150 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttcttttta----taaatgtgttaatgggcttttg 16155055  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||  ||||||||| ||||||||||||| |||||||    
T  16155054 ggttgagtctaatgtgcaaaaattatcgatcgagcccg 16155017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 36293635 - 36293760
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  36293635 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 36293730  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||  ||||||||  |||||||||||||    
T  36293731 ggttgagtctaatgtacaaaaattatcgat 36293760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39434849 - 39434709
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||  |||||||||| | ||| | ||||||||||||| ||||||||||| ||    |||||||||||||||||  |||||     
T  39434849 aatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcatt----ttgtaaatgtgttaatgggcttttg 39434754  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  39434753 ggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgacc 39434709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 19986092 - 19985962
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||| ||||||||||| | |||||||||||||||| | |||||| |||||  ||||||||||||||    ||||||||||| ||||| ||||||     
T  19986092 aatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttcttt----ttgtaaatgtgctaatggacttttg 19985997  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagc 135  Q
    ||||| |||||||||| ||||||||||||| ||||    
T  19985996 ggttgaatctaatgtgcaaaaattatcgatcgagc 19985962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 28801415 - 28801300
Alignment:
Q  28 cctatttgcgtgtaagaattttcagattgt--ccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    ||||||||||||| |||||||||| ||| |  |||||||||||||||||    ||| ||||||||||  ||||| | |||||||||||||| ||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttg----taagtgtgttaatgggcttttggtttggatctaatgtgcaaaaatta 28801320  T
Q  126 tcgattgagcccgagcgacc 145  Q
    ||||| ||||| | ||||||    
T  28801319 tcgatcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 36408704 - 36408564
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||| |||| | ||| |||||||||||    |||||||||||||| ||||||     
T  36408704 aatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttg----taaatgtgttaatggacttttg 36408609  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||    
T  36408608 ggttggatctaatgtgcaaaaattatcgatcgagcccgggcgacc 36408564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 34136843 - 34136979
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  |||||| ||||    
T  34136843 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttgggtt 34136938  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |  ||||||||| ||||||||||||| ||||||| ||||||    
T  34136939 gagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 34136979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 15838438 - 15838306
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||     ||||||||||||||||| |||||||    
T  15838438 aatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttctt-----ttgtaaatgtgttaatggacttttt 15838344  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||  | ||||||| |||||||||| || |||||||    
T  15838343 ggttgagtttaatgtgcaaaaattatcaatcgagcccg 15838306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29728400 - 29728540
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||| |||||     
T  29728400 aatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgagcttttg 29728495  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| |||| |||||||| |||| || ||||||    
T  29728496 ggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgacc 29728540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 4404157 - 4404021
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||    ||| | |||||||   ||||| ||||    
T  4404157 gtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttg----taagtatgttaattggcttttgggtt 4404062  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |  ||||||||| ||||||||||||| ||||||| ||||||    
T  4404061 gagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 4404021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 16788039 - 16788179
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||| ||||||||||||||    |||||| |||||||||   |||||     
T  16788039 aatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 16788134  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  16788135 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 16788179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 23402261 - 23402121
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  23402261 aatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 23402166  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| |||||| || ||| ||||||||| ||||||| ||||||    
T  23402165 ggttgggtctaatatgcaaagattatcgatcgagcccgggcgacc 23402121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 3648808 - 3648947
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| | ||||| |||||||| | ||||||||||||| ||||| ||||||||    |||||||||||||||||  |||||     
T  3648808 aatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttcttt----ttgtaaatgtgttaatgggcttttg 3648903  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    |||||  ||||||||| ||||||||||||| ||||||| |||||    
T  3648904 ggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 9877373 - 9877242
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  9877373 aatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttg 9877278  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcc 136  Q
    |||| | ||||||||| |||||||||| || |||||    
T  9877277 ggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 39914667 - 39914528
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| | ||| | |||||||| |||| |||||||||| ||||      ||||||||||||||| ||||||    
T  39914667 aatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaatttttttttta-----taaatgtgttaatgagcttttt 39914573  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  39914572 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 39914528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 42231090 - 42230971
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||| ||||||||||||| | | |||||||||| |||| ||||||||||||||    ||||||  ||||||||| ||||||     
T  42231090 aatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttcttt----ttgtaa--gtgttaatggacttttg 42230997  T
Q  101 ggttggatctaatgtgtaaaaattat 126  Q
     ||||||| ||||||| |||||||||    
T  42230996 agttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 2729210 - 2729343
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||  ||||||||||||||| | ||| |||||| |||| | |||  |||||||||     ||| ||||||||||  |||||     
T  2729210 aatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttcttttta----taagtgtgttaatgggcttttg 2729305  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    | |||||| ||||||||||||||||||||| |||||||    
T  2729306 gattggatttaatgtgtaaaaattatcgatcgagcccg 2729343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 3435397 - 3435297
Alignment:
Q  28 cctatttgcgtgtaagaattttcagattgt--ccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    ||||||||||| | |||||||||||||| |  |||||||||||||||||    ||| ||||||||||   |||| |||||| ||||||||| ||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttg----taagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaatta 3435302  T
Q  126 tcgat 130  Q
    |||||    
T  3435301 tcgat 3435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 771152 - 771012
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| ||||||||||  ||||||    
T  771152 aataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaatgggcttttt 771057  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| |||| |||||||| ||||||| ||||||    
T  771056 ggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgacc 771012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 6403818 - 6403958
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||     ||||||||||||||||||||||    
T  6403818 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttttta----taaatgtgttaatgaacttttt 6403913  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  6403914 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 6403958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 16405753 - 16405613
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||     ||||||||||||||| |||||     
T  16405753 aatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttcttttta----taaatgtgttaatgagcttttg 16405658  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||| ||| ||||||||||||||||||||| ||||||    
T  16405657 ggttgagtctaacgtgcaaaaattatcgattgagcccgggcgacc 16405613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 45418736 - 45418596
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||   |||||     
T  45418736 aatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattggcttttg 45418641  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||    
T  45418640 ggttggatctaatgcgcaaaaattatcgatcgagcccgggcgacc 45418596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 44084617 - 44084756
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||    |||||| |||||||||||||||||     
T  44084617 aatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaatgaacttttg 44084712  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgac 144  Q
    | |||| | ||||||| ||||||||||||| ||||||| |||||    
T  44084713 gattgggtttaatgtgcaaaaattatcgatcgagcccgggcgac 44084756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 41251648 - 41251788
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  41251648 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 41251743  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  41251744 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 41251788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 42440139 - 42439999
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| | |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  42440139 aatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 42440044  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||||   ||||||||| ||||||||||||| ||||||| ||||||    
T  42440043 ggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 42439999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 35962868 - 35962735
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||| ||||| ||||||||    |||||||||||||||| | |||||     
T  35962868 aatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttcttt----ttgtaaatgtgttaataagcttttg 35962773  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||  ||||||||| ||||||||||||| |||||||    
T  35962772 ggttgagtctaatgtgcaaaaattatcgatcgagcccg 35962735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2286015 - 2285890
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| | |||||||||||||| | |||||||||||||  |||||||||| ||    | ||||||||||||||  |||||||    
T  2286015 aatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctt----tcgtaaatgtgttaatagacttttt 2285920  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||||| ||||||| |||||||||||||    
T  2285919 ggttggatttaatgtgcaaaaattatcgat 2285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 8147505 - 8147364
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaa-ttttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttt 99  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||    |||||| |||||||||  ||||||    
T  8147505 aatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgactttt 8147410  T
Q  100 tggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
      ||||| ||||||||| ||| ||||||||| ||||||| ||||||    
T  8147409 gagttgggtctaatgtgcaaagattatcgatcgagcccgggcgacc 8147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 12756851 - 12756976
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||  |||||||||||||    |||||| |||||||||   |||||     
T  12756851 aatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttcttt----ttgtaagtgtgttaattggcttttg 12756946  T
Q  101 ggttggatctaatgtgtaaaaattatcgat 130  Q
    |||||| ||||||| | |||||||||||||    
T  12756947 ggttgggtctaatgcgcaaaaattatcgat 12756976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 32127155 - 32127295
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||| | ||||||||||||    |||||||||||||||||| |||||     
T  32127155 aatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttcttt----ttgtaaatgtgttaatgagcttttg 32127250  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    ||| |  | ||||||| ||||||||| ||| ||||||| ||||||    
T  32127251 ggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgacc 32127295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 8059351 - 8059478
Alignment:
Q  5 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggtt 104  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||| |||| ||||||||||||||    |||||| |||||||||   ||||| ||||    
T  8059351 gtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttcttt----ttgtaagtgtgttaattggcttttgggtt 8059446  T
Q  105 ggatctaatgtgtaaaaattatcgattgagcc 136  Q
    |  ||||||||| |||||||||||||||||||    
T  8059447 gactctaatgtgcaaaaattatcgattgagcc 8059478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 18981766 - 18981636
Alignment:
Q  4 agtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggt 103  Q
    |||||||||||||||||||| |||||||||||||||| | |||||| | |||| ||||||||||||||    |||||||||| |||||| |||||| |||    
T  18981766 agtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttcttt----ttgtaaatgttttaatggacttttgggt 18981671  T
Q  104 tggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||  ||||||||| |||||||||| || |||||||    
T  18981670 tgagtctaatgtgcaaaaattatcaatcgagcccg 18981636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 17445055 - 17445193
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  17445055 aatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 17445150  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||  ||| ||||||||||||| |||| || ||||||    
T  17445151 ggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgacc 17445193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31581636 - 31581776
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  31581636 aatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 31581731  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    || ||  |||||| || ||||| ||||| | ||||| | ||||||    
T  31581732 ggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgacc 31581776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 26162716 - 26162846
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| ||||||||||||   ||||||||||||||| || | |||||||| |||||| ||||||||||||||    |||||| ||||||||||   ||||     
T  26162716 aataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttcttt----ttgtaagtgtgttaatgggtttttg 26162808  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||| || ||||||||||||||||||||  |||||||    
T  26162809 ggttgaatttaatgtgtaaaaattatcgaaggagcccg 26162846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 2958131 - 2958247
Alignment:
Q  17 aaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtg 116  Q
    ||||||| |||||||||||||||| | ||||||||||||  |||||||||||| |    |||||||||||||||||  ||||| |||||  |||||||||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctct----ttgtaaatgtgttaatgggcttttgggttgagtctaatgtg 2958226  T
Q  117 taaaaattatcgattgagcccg 138  Q
      |||||||||||| |||||||    
T  2958227 -caaaattatcgatcgagcccg 2958247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 4555250 - 4555350
Alignment:
Q  28 cctatttgcgtgtaagaattttcagattgt--ccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    ||||||| ||||| |||||||||||||| |  ||||| |||||||||||    ||| |||||||| || ||||| |||||| | | ||||| ||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttg----taagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaatta 4555345  T
Q  126 tcgat 130  Q
    |||||    
T  4555346 tcgat 4555350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 3829136 - 3828997
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||||| |||||||||||||| | | ||||||||||||| |||||||||||||||||    ||| |||||||||||||||||     
T  3829136 aatagtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttg----taagtgtgttaatgaacttttg 3829042  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| | ||||||| ||||||||||||| || |||||||||||    
T  3829041 ggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgacc 3828997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 17445466 - 17445326
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    |||||| |||||||||  ||||||     
T  17445466 aataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttcttt----ttgtaagtgtgttaattgacttttg 17445371  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||||||||||||  ||||||||| |||  |||||| ||||||    
T  17445370 ggttggatctaatgtacaaaaattattgatccagcccgggcgacc 17445326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26144408 - 26144268
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||||     ||||||||||||||| ||||||    
T  26144408 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta----taaatgtgttaatgagcttttt 26144313  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  26144312 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 26144268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 32982070 - 32982210
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||| ||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||    |||||||| ||||||||  |||||     
T  32982070 aatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttcttt----ttgtaaatatgttaatgggctttta 32982165  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| ||||||||||||| | ||||| ||||||    
T  32982166 ggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgacc 32982210  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 321391 - 321524
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| |||| |||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||    |||||| |||||||||| ||||||     
T  321391 aataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttcttt----ttgtaactgtgttaatggacttttg 321486  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    ||||||||||||||   ||||||||||||| |||||||    
T  321487 ggttggatctaatgcacaaaaattatcgatcgagcccg 321524  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 35907705 - 35907565
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||||||    |||||| |||  ||||   |||||     
T  35907705 aataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttcttt----ttgtaagtgtactaattggcttttg 35907610  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| ||||||||| |||||||||||||  |||||| ||||||    
T  35907609 ggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgacc 35907565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42310955 - 42311093
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||| || |||||||||||| | |||| ||||||||||| | ||||||||||||| ||||||||||||||    ||||||||||||||| |  |||||     
T  42310955 aatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaacgggcttttg 42311050  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcga 143  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||    
T  42311051 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 42311093  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 7433598 - 7433458
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| | ||||||||||| |||| | |||||| |||||| ||||| ||||||||    |||||||||||||||||  |||||     
T  7433598 aatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttcttt----ttgtaaatgtgttaatgggcttttg 7433503  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||| ||| |||| || ||||||    
T  7433502 ggttgagtctaatgtgcaaaaattatagatcgagctcgggcgacc 7433458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 41972314 - 41972420
Alignment:
Q  28 cctatttgcgtgtaagaattttcagattgt--ccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtgtaaaaatta 125  Q
    ||||||||||||| |||||||||||||| |  |||||||||||||||||    ||| |||||||||   ||||| |||||||||||||||| ||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttg----taagtgtgttaataggcttttaggttggatctaatgtgcaaaaatta 41972409  T
Q  126 tcgattgagcc 136  Q
    ||||| |||||    
T  41972410 tcgatcgagcc 41972420  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 23313345 - 23313281
Alignment:
Q  48 ttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaactttttggttggatctaatgtg 116  Q
    ||||||||| |||||||||||||||||    |||||||||||||||||||||  ||||  |||||||||    
T  23313345 ttcagattgcccaaatttttctttttg----taaatgtgttaatgaacttttatgttgagtctaatgtg 23313281  T

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Target: scaffold2142 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 675 - 535
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||||     ||||||||||||||| ||||||    
T  675 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta----taaatgtgttaatgagcttttt 580  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  579 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 31633 - 31493
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||    |||||| ||||||||||  |||||     
T  31633 aatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttcttt----ttgtaagtgtgttaatgggcttttg 31538  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||| |||| |||| ||||||||||||| ||||||| ||||||    
T  31537 ggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgacc 31493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 480471 - 480611
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||| |||||||||||| |||||||||| ||||| | |||||||| |||| ||||||||||||||||     ||||||||||||||| ||||||    
T  480471 aatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttta----taaatgtgttaatgagcttttt 480566  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    |||||  ||||||||| ||||||||||||| ||||||| ||||||    
T  480567 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgacc 480611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5383 - 5243
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||    |||||| |||||||||   |||||     
T  5383 aatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttcttt----ttgtaagtgtgttaattggctttta 5288  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccgagcgacc 145  Q
    | |||| ||||||||| ||||||||| ||| ||||||| ||||||    
T  5287 gattgggtctaatgtgcaaaaattattgatcgagcccgggcgacc 5243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 17995 - 17862
Alignment:
Q  1 aatagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgcttgtaaatgtgttaatgaacttttt 100  Q
    ||||||||||||||||||||| | |||||||||| | ||| | ||||||||||||| ||||||||||||||    |||||||||||||||||  |||||     
T  17995 aatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttcttt----ttgtaaatgtgttaatgggcttttg 17900  T
Q  101 ggttggatctaatgtgtaaaaattatcgattgagcccg 138  Q
    |||||  ||||||||| ||||||||||||| |||||||    
T  17899 ggttgagtctaatgtgcaaaaattatcgatcgagcccg 17862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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