View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_1 (Length: 1036)
Name: NF10916_high_1
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 706; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 122 - 1032
Target Start/End: Original strand, 36890631 - 36891525
Alignment:
| Q |
122 |
gcaatatattgttcttttacgcatatatcaagagaaaaacattgacataacaaatgtttttctatgactaattacacatgaattaatggaagatcataag |
221 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
36890631 |
gcaatatattgttcttttacacatatatcaagagaaaaacattgacataacaaatgtttttctatgactaat-acacatg--------gaagat---aag |
36890718 |
T |
|
| Q |
222 |
caggcaacaagctacaagctgcgctgctagcttttttggatgacacatatattt-acttctgnnnnnnnggtagaaacagatattgacatat--tgttct |
318 |
Q |
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||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| || |
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| T |
36890719 |
caggcaacaagct-------gcgccgctagctttttcggatgacacatatattttacttctgttttttaggtagaaacagatattgacatatattgtgct |
36890811 |
T |
|
| Q |
319 |
ataattggttatacatatgtgttatctgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaat |
418 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36890812 |
ataattggttatacatatgtgttatgtgatgaaacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaat |
36890911 |
T |
|
| Q |
419 |
caactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagtacatata |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36890912 |
caactcctctcaaagtccttgccactagaccttcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagtacatata |
36891011 |
T |
|
| Q |
519 |
catgtgttggagaattatgtaacatttatattatgacatataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgccaaattaaggca |
618 |
Q |
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| T |
36891012 |
catgtgttggagaattatgtaacatttatattatgacatataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgccaaattaaggca |
36891111 |
T |
|
| Q |
619 |
tactcgtggaaccactggatcatgaaaaagcaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttaccagataacta |
718 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36891112 |
tactcgtggaaccactggatcatgaaaaaacaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttaccagataacta |
36891211 |
T |
|
| Q |
719 |
caccactttatattatttcttctctatagggttgatggccactctattcggtatgcgataaaaatggattctaatgccatcggtcttccnnnnnnnnnnn |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36891212 |
taccactttatattatttcttctctatagggttgatggccactctattcggtatgcgataaaaatggattctaatgccatcggtcttccttttttatgtt |
36891311 |
T |
|
| Q |
819 |
nnnnnnnnnngctttattcctttgattgatgcttaactaactgatacatgatttaatgtgtcttcactgatacaacatcatagatatttgttccccaaaa |
918 |
Q |
| |
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| T |
36891312 |
taatttttttgctttattcctttgattgatgcttaactaactgatacatgatttaatgtgtcttcactgatacaacatcatagatatttgttccccaaaa |
36891411 |
T |
|
| Q |
919 |
gggataataacttaacttgagcatgtaaaaagaaggaattagcttatgtcataagcttatatatatagcctttttgtaactttaggttattacatgaaat |
1018 |
Q |
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| T |
36891412 |
gggataataacttaacttgagcatgtaaaaagaaggaattagcttatgtcataagcttatatatatagcctttttgtaactttaggttattacatgaaat |
36891511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 351 - 731
Target Start/End: Original strand, 36877777 - 36878162
Alignment:
| Q |
351 |
aacagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagacct |
450 |
Q |
| |
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||||||||||||||||||| |||||||| | ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
36877777 |
aacagatttggctgtgataatagtacatcaatatgattacctcagcacacatctgaacaaagaaggatcaactcctctcaaagtccttgcagctagacct |
36877876 |
T |
|
| Q |
451 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaag----------tacatatacatgtgttggagaattatgtaa |
540 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| |
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| T |
36877877 |
tcagccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagtactaattaatacatatatatgtgttagaaaattatgt-- |
36877974 |
T |
|
| Q |
541 |
catttatattatgacat-ataaaaatgtactatatatgtgatttgagtattttaatttgtttgttgccaaattaaggcatactcgtggaaccactggatc |
639 |
Q |
| |
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||| |||||| | || || ||||| ||| |||||| || |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36877975 |
-attgatattactatataattaaaatctac-atatatatgttttgag--tcttaatttgtttgttgacaaattaaggcatactcgtggaaccactggatc |
36878070 |
T |
|
| Q |
640 |
atgaaaaagcaatgagatcaaatttgagaaagatggaggctggttcagattctaacaagatgaagttaccagataactacaccactttatat |
731 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
36878071 |
atgaaaaagcaatgaggtcaaatttgagaaagatggaggctggttcagattccaacaagatgaagttaccagataactataccactttatat |
36878162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 353 - 512
Target Start/End: Original strand, 36897546 - 36897705
Alignment:
| Q |
353 |
cagatttggctgtgatagtagtacattactatgatttcctaagcacacatctgaacaaagaagaatcaactcctctcaaagtccttgccactagaccttc |
452 |
Q |
| |
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||||||| ||||||||| ||| | ||||||||| |||||| |||||||||| |||| |||| | ||| |||||||| | ||||||| | || ||||| |
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| T |
36897546 |
cagatttagctgtgataatagcaaattactatgctttccttagcacacatcagaacgaagaggtatccactcctctgtatctccttgctaataagccttc |
36897645 |
T |
|
| Q |
453 |
agccttcaaaagtgcaagcaacctttcatggtataagcgaatcctataccactgtaagta |
512 |
Q |
| |
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||| ||||||||| | |||| ||| |||||||||| |||||||||||| || ||||||| |
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| T |
36897646 |
agctttcaaaagttctagcagcctaccatggtataaacgaatcctatactacagtaagta |
36897705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 36890337 - 36890374
Alignment:
| Q |
19 |
acggacacctcttggacatagctattccgtttatattt |
56 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| |
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| T |
36890337 |
acggacacctcttggatatggctattccgtttatattt |
36890374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 946
Target Start/End: Original strand, 36899683 - 36899716
Alignment:
| Q |
913 |
ccaaaagggataataacttaacttgagcatgtaa |
946 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
36899683 |
ccaaatgggataataacttaacttgagcatgtaa |
36899716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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