View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10916_high_13 (Length: 414)

Name: NF10916_high_13
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10916_high_13
NF10916_high_13
[»] chr6 (15 HSPs)
chr6 (1-414)||(14578122-14578535)
chr6 (1-277)||(2829148-2829424)
chr6 (1-265)||(2909497-2909760)
chr6 (1-286)||(2832790-2833075)
chr6 (3-277)||(2860056-2860330)
chr6 (3-277)||(2865441-2865715)
chr6 (3-277)||(2884631-2884905)
chr6 (1-286)||(2842545-2842830)
chr6 (356-413)||(2885056-2885113)
chr6 (332-414)||(2829026-2829108)
chr6 (356-414)||(2860487-2860545)
chr6 (351-413)||(2865861-2865923)
chr6 (342-414)||(2833164-2833236)
chr6 (356-414)||(2842384-2842442)
chr6 (356-414)||(2909902-2909960)
[»] chr7 (1 HSPs)
chr7 (145-277)||(1801140-1801272)
[»] chr4 (1 HSPs)
chr4 (111-181)||(6318517-6318587)


Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 14578535 - 14578122
Alignment:
Q  1 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14578535 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataattggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 14578436  T
Q  101 cactttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14578435 cactttgaatgcttcatagctacaatatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 14578336  T
Q  201 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttactttattttcctctatattagagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14578335 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttactttattttcctctatattagagt 14578236  T
Q  301 atttacctttgtgtacataatccnnnnnnncctttcttgtgccagtgagttcaatagaacaatcaatatcctcaatcactataattgatttgcttgacgt 400  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14578235 atttacctttgtgtacataatcctttttttcctttcttgtgccagtgagttcaatagaacaatcaatatcctcaatcactataattgatttgcttgacgt 14578136  T
Q  401 cgcaatcaaaagtc 414  Q
    ||||||||||||||    
T  14578135 cgcaatcaaaagtc 14578122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 2829424 - 2829148
Alignment:
Q  1 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 100  Q
    |||||||||| |||||||| |||||||||| | | |  || ||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  2829424 cagcaacatcagcaggtgtcatattagtcttttccaacaatttttcaataattggaaataaatcatcatgagactcaacatcccaatagttctttgcaag 2829325  T
Q  101 cactttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 200  Q
    ||| ||||| |||| ||||||||| || |||||||| |||||| |||||||||||||||||||||| || ||| |||||||||| |||||||| || |||    
T  2829324 caccttgaaagcttgatagctacaataagacatttctatatgcttatccatccttcccctcctaattagggcaggatcaagtttgtccacaaaatttgtt 2829225  T
Q  201 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttac 277  Q
    ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  2829224 gtgaaaattatgatcctctctcctccacatgcagaccaaatcccatcaataaaattcaacaaaccagaaagagttac 2829148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 2909497 - 2909760
Alignment:
Q  1 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 100  Q
    |||||||||| |||||||| |||||||||||||| |  |||||||||||||| ||||||||| |||||||||||||||||||  | || |||||||||||    
T  2909497 cagcaacatcagcaggtgtcatattagtctctcccaacaacttttcaataattggaaacaaatcatcatgagactcaacatctaagtagttctttgcaag 2909596  T
Q  101 cactttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 200  Q
    ||  |||||  ||| ||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||    
T  2909597 catcttgaacacttgatagctacaataggacatttcaatgtgcatatccatccttcccctccttataagagcaggatcaagtttgtccacaaaattagtt 2909696  T
Q  201 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaacc 265  Q
    ||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  2909697 gtg-aaattatgatcctttctcctccacatgttgaccaaattccatcaataaaattcaacaaacc 2909760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 2832790 - 2833075
Alignment:
Q  1 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 100  Q
    |||||||||| |||||||| |||||||||||||| |  |||||||||||||| ||||||||| ||||||||| |||||||||  | || ||  |||||||    
T  2832790 cagcaacatcagcaggtgtcatattagtctctcccaacaacttttcaataattggaaacaaatcatcatgagtctcaacatctaagtagtttcttgcaag 2832889  T
Q  101 cactttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 200  Q
     || ||||| |||| ||||||||| || |||||||| |||||| ||||||| ||||||||||| ||||||||| |||||||||| |||||||| || |||    
T  2832890 aaccttgaaagcttgatagctacaataagacatttctatatgcttatccattcttcccctccttataagagcaggatcaagtttgtccacaaaatttgtt 2832989  T
Q  201 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttactttattttc 286  Q
    ||||||||||| ||||| |||  ||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||| ||||    
T  2832990 gtgaaaattattatcctctctgatccacatgctgaccaaattccatcaatgaaattcaacaaaccagaaagagttaccttactttc 2833075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 2860056 - 2860330
Alignment:
Q  3 gcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaagca 102  Q
    |||||||| || ||||  |||||||||||||| |  |||||||||||||| ||||||||| || ||||||||||||||||| | || ||||| ||||| |    
T  2860056 gcaacatcagctggtgacatattagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaa 2860155  T
Q  103 ctttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggttgt 202  Q
    | ||||| |||| ||||||||| || |||||||| || ||  |||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||    
T  2860156 ccttgaacgcttgatagctacaataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgt 2860255  T
Q  203 gaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttac 277  Q
    |||||||||||||| ||||||||||||||  |||||||||||||| ||| ||||||||||||| |||||||||||    
T  2860256 gaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttac 2860330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 2865441 - 2865715
Alignment:
Q  3 gcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaagca 102  Q
    |||||||| || ||||  |||||||||||||| |  |||||||||||||| ||||||||| || ||||||||||||||||| | || ||||| ||||| |    
T  2865441 gcaacatcagctggtgacatattagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaa 2865540  T
Q  103 ctttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggttgt 202  Q
    | |||||||||| ||| ||||| || |||||||| || ||  |||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||    
T  2865541 ccttgaatgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgt 2865640  T
Q  203 gaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttac 277  Q
    |||||||||||||| ||||||||||||||  |||||||||||||| ||| ||||||||||||| |||||||||||    
T  2865641 gaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttac 2865715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 3 - 277
Target Start/End: Original strand, 2884631 - 2884905
Alignment:
Q  3 gcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaagca 102  Q
    |||||||| |||||||  |||||||||||||| |  |||||||||||||| ||||||||| || ||||||||||||||||| | || ||||| ||||| |    
T  2884631 gcaacatcagcaggtgacatattagtctctcccaacaacttttcaataattggaaacaaatcaccatgagactcaacatccaagtagttcttagcaagaa 2884730  T
Q  103 ctttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggttgt 202  Q
    | ||||| |||| ||| ||||| || |||||||| || ||  |||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||    
T  2884731 ccttgaacgcttgatatctacaataggacatttctatgtgtttatccatccttcccctcctaattagagcaggatcaagtttgtccacaaaattagttgt 2884830  T
Q  203 gaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttac 277  Q
    |||||||||||||| ||||||||||||||  |||||||||||||| ||| ||||||||||||| |||||||||||    
T  2884831 gaaaattatgatccgttctcctccacatgatgaccaaattccatcaatagaattcaacaaacccgaaagagttac 2884905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2842830 - 2842545
Alignment:
Q  1 cagcaacatctgcaggtgttatattagtctctcctattaacttttcaataataggaaacaaaccatcatgagactcaacatcccaataattctttgcaag 100  Q
    |||||||||| |||||||| |||||||||||| | |  |||||||||||||| ||||| ||| |||||||| ||||||||||  | || ||  |||||||    
T  2842830 cagcaacatcagcaggtgtcatattagtctcttccaacaacttttcaataattggaaataaatcatcatgaaactcaacatctaagtagtttcttgcaag 2842731  T
Q  101 cactttgaatgcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggtt 200  Q
     || || || |||| ||||||||| || |||||||| |||||| ||||||| ||||| ||||| ||||||||| ||||||||||||||||||| || |||    
T  2842730 aaccttaaaagcttgatagctacaataagacatttctatatgcttatccattcttcctctccttataagagcaggatcaagtttatccacaaaattagtt 2842631  T
Q  201 gtgaaaattatgatcctttctcctccacatgccgaccaaattccatcgataaaattcaacaaaccagaaagagttactttattttc 286  Q
    ||||||||||||||||| |||  ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||    
T  2842630 gtgaaaattatgatcctctctgatccacatgctgaccaaattccatcaataaaattcaacaaacccgaaagagttaccttactttc 2842545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 413
Target Start/End: Original strand, 2885056 - 2885113
Alignment:
Q  356 agaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagt 413  Q
    ||||||||||||||| ||||| || |||| |||||||||||||||| |||||||||||    
T  2885056 agaacaatcaatatcttcaataacgataactgatttgcttgacgtctcaatcaaaagt 2885113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 2829108 - 2829026
Alignment:
Q  332 ctttcttgtgccagtgagttcaatagaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtc 414  Q
    |||||||  ||| ||||| |||| ||||||||||||||| ||||| |||||||| ||||| || |||||| | ||||||||||    
T  2829108 ctttctttggccggtgagatcaagagaacaatcaatatcttcaataactataatcgatttactcgacgtctcgatcaaaagtc 2829026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 2860487 - 2860545
Alignment:
Q  356 agaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtc 414  Q
    ||||||||||||||| ||||| || |||| ||||||||| |||||| ||||||||||||    
T  2860487 agaacaatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagtc 2860545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 2865861 - 2865923
Alignment:
Q  351 tcaatagaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagt 413  Q
    |||| ||||||||||||||| ||||| || |||| ||||||||| |||||| |||||||||||    
T  2865861 tcaagagaacaatcaatatcttcaataacgataactgatttgctcgacgtctcaatcaaaagt 2865923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 2833164 - 2833236
Alignment:
Q  342 ccagtgagttcaatagaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtc 414  Q
    |||||||| || | ||||||||||||||| || || |||||||| ||||| ||||||||  ||||||||||||    
T  2833164 ccagtgagatcgagagaacaatcaatatcttcgataactataatcgatttacttgacgtttcaatcaaaagtc 2833236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 2842442 - 2842384
Alignment:
Q  356 agaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtc 414  Q
    ||||||||||||||| ||||| || ||||| ||||| || |||||| ||||||||||||    
T  2842442 agaacaatcaatatcttcaataacaataatcgatttactcgacgtctcaatcaaaagtc 2842384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Original strand, 2909902 - 2909960
Alignment:
Q  356 agaacaatcaatatcctcaatcactataattgatttgcttgacgtcgcaatcaaaagtc 414  Q
    ||||||||||||||| ||||| |||||||| ||||| || || ||| ||||||||||||    
T  2909902 agaacaatcaatatcgtcaataactataatcgatttactcgatgtctcaatcaaaagtc 2909960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 1801272 - 1801140
Alignment:
Q  145 tatccatccttcccctcctaataagagcatgatcaagtttatccacaaagttggttgtgaaaattatgatcctttctcctccacatgccgaccaaattcc 244  Q
    |||||||||||||  |||||||||||||  |||||||||| |||||||| || || ||||||||||| ||||| || |||||||| || |||||||||||    
T  1801272 tatccatccttcctgtcctaataagagctggatcaagtttctccacaaaattcgtcgtgaaaattataatcctctcccctccacacgcggaccaaattcc 1801173  T
Q  245 atcgataaaattcaacaaaccagaaagagttac 277  Q
    ||| ||||||||||| |||||||| | ||||||    
T  1801172 atcaataaaattcaataaaccagataaagttac 1801140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 6318587 - 6318517
Alignment:
Q  111 gcttcatagctacattatgacatttcaatatgcatatccatccttcccctcctaataagagcatgatcaag 181  Q
    |||| ||||||||| || |||||||| || | | ||||||||||||||||||| || |||||| |||||||    
T  6318587 gcttgatagctacaataagacatttctatgttcttatccatccttcccctcctgatgagagcaggatcaag 6318517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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