View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_14 (Length: 411)
Name: NF10916_high_14
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 53804831 - 53805219
Alignment:
| Q |
19 |
ctgattcccttgtctttgtaaactccttgacactctgcttggcgtccacatggtgattccacgcatttaaccattagtggattcgatggagtaaacacat |
118 |
Q |
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| T |
53804831 |
ctgatccccttgtctttgtaaactccttgacactccgcttggcgtccacatggtgattccacgcatttaaccattaggggattcgatggagtaaacacat |
53804930 |
T |
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| Q |
119 |
gcataatcttgcacgaaactaattaccaaaaatctcaatttagttaattattttgattacttaataattgaaaacactaaagaatgactaattaaattgt |
218 |
Q |
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| T |
53804931 |
gcataatcttgcacgaaactaattaccaaaaatctcaatttagttaattattttgattacttaataattgaaaacactaaacaatgactaattaaattgt |
53805030 |
T |
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| Q |
219 |
acaacttgcttgcttacctggattgagttcaatttttgaatggtaacgaagttttccaacgtctagcatttccaaaatcacattccctgaatccgatgcc |
318 |
Q |
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| T |
53805031 |
acaacttgcttgcttacctggattgagttcaatttttgaatggtaacgaagttttccaacgtctagcatttccaaaatcacattccctgaatccgatgcc |
53805130 |
T |
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| Q |
319 |
ctttcaaatagaatctgaatctctttcactgtttcagaaaaacctttcacagattccattttcggagaattgctacattcttctcactc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53805131 |
ctttcaaatagaatctgaatctctttcactgtttcagaaaaacctttcacagattccattttcggagaattgctacattcttctaactc |
53805219 |
T |
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