View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10916_high_15 (Length: 406)
Name: NF10916_high_15
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_15 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 34784157 - 34784539
Alignment:
| Q |
18 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34784157 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
34784256 |
T |
|
| Q |
118 |
atggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34784257 |
atggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
34784356 |
T |
|
| Q |
218 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34784357 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcg |
34784456 |
T |
|
| Q |
318 |
cgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34784457 |
cgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 34775945 - 34776327
Alignment:
| Q |
18 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| | || || ||||||| |||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
34775945 |
cttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtggagttcctcaaagaa |
34776044 |
T |
|
| Q |
118 |
atggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
217 |
Q |
| |
|
|||||||||||| |||||| ||||||| | ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34776045 |
atggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaatctagtactttgagt |
34776144 |
T |
|
| Q |
218 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcg |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||| || || || ||||||||||| |||||||||||||| | |
|
|
| T |
34776145 |
atgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgttttcgagggtttggagtctcttgttgatgttg |
34776244 |
T |
|
| Q |
318 |
cgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
||||| || |||| ||| ||||| || ||||||||| |||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
34776245 |
gaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaaatgtactgtttttgatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 400
Target Start/End: Complemental strand, 11468334 - 11468116
Alignment:
| Q |
182 |
tttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaaga |
281 |
Q |
| |
|
||||||||||||||||||||||||| || | || ||||||||| || ||||| |||||||| |||||||||||||||||| | || || |
|
|
| T |
11468334 |
tttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagcc |
11468235 |
T |
|
| Q |
282 |
atgtgtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgt |
381 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || ||||| || || | ||| |||| || |||||||||| |||||| || ||||||||||| || |
|
|
| T |
11468234 |
atgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagt |
11468135 |
T |
|
| Q |
382 |
ttttgatcaaccacaggtt |
400 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11468134 |
tttagatcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 400
Target Start/End: Original strand, 11523127 - 11523345
Alignment:
| Q |
182 |
tttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaaga |
281 |
Q |
| |
|
||||||||||||||||||||||||| || | || ||||||||| || ||||| |||||||| |||||||||||||||||| | || || |
|
|
| T |
11523127 |
tttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagctgattcacaaatgtttaagcttgctctcaaggactgcagcc |
11523226 |
T |
|
| Q |
282 |
atgtgtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgt |
381 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || ||||| || || | ||| |||| || |||||||||| |||||| || ||||||||||| || |
|
|
| T |
11523227 |
atgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaaaactcattcatgaagaatttccacacatcaaatgcacagt |
11523326 |
T |
|
| Q |
382 |
ttttgatcaaccacaggtt |
400 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
11523327 |
tttagatcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 400
Target Start/End: Complemental strand, 11445377 - 11445126
Alignment:
| Q |
149 |
tttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattcta |
248 |
Q |
| |
|
|||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
11445377 |
tttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctc |
11445278 |
T |
|
| Q |
249 |
gaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttat |
348 |
Q |
| |
|
||| || || |||||||| | ||| ||| |||||||||| |||||||| ||| | |||||||| | ||||||| || | | ||||||| || || |
|
|
| T |
11445277 |
aaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcat |
11445178 |
T |
|
| Q |
349 |
tcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
|||||||| |||||| | |||||||||| || |||||||||||||||||| |
|
|
| T |
11445177 |
ccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 149 - 400
Target Start/End: Original strand, 11547713 - 11547964
Alignment:
| Q |
149 |
tttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattcta |
248 |
Q |
| |
|
|||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||| |
|
|
| T |
11547713 |
tttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctc |
11547812 |
T |
|
| Q |
249 |
gaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttat |
348 |
Q |
| |
|
||| || || |||||||| | ||| ||| |||||||||| |||||||| ||| | |||||||| | ||||||| || | | ||||||| || || |
|
|
| T |
11547813 |
aaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcat |
11547912 |
T |
|
| Q |
349 |
tcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
|||||||| |||||| | |||||||||| || |||||||||||||||||| |
|
|
| T |
11547913 |
ccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 115 - 400
Target Start/End: Original strand, 11507448 - 11507733
Alignment:
| Q |
115 |
gaaatggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttg |
214 |
Q |
| |
|
||||||| ||| |||||| ||| ||| | ||| |||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | || |
|
|
| T |
11507448 |
gaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactg |
11507547 |
T |
|
| Q |
215 |
agtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatg |
314 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||||||||| |||||| | ||| | ||||||| |
|
|
| T |
11507548 |
agtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagtctatagttgatg |
11507647 |
T |
|
| Q |
315 |
tcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
| | ||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || |||||||||||||||||| |
|
|
| T |
11507648 |
ttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 115 - 400
Target Start/End: Original strand, 2105 - 2390
Alignment:
| Q |
115 |
gaaatggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttg |
214 |
Q |
| |
|
||||||| ||| |||||| ||| ||| | ||| |||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | || |
|
|
| T |
2105 |
gaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactg |
2204 |
T |
|
| Q |
215 |
agtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatg |
314 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||||||||| ||||||| ||| | ||||||| |
|
|
| T |
2205 |
agtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggtctatagttgatg |
2304 |
T |
|
| Q |
315 |
tcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccacaggtt |
400 |
Q |
| |
|
| | ||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || |||||||||||||||||| |
|
|
| T |
2305 |
ttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University