View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_20 (Length: 361)
Name: NF10916_high_20
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 46503155 - 46502818
Alignment:
| Q |
20 |
gaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggtttatgtgagagaaa |
119 |
Q |
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| T |
46503155 |
gaaggtatgttggtttatgaactcaaggaggatcaagagaggatcatcttctttttagaggtgagtttagtgggaataaagttggtttatgtgagagaaa |
46503056 |
T |
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| Q |
120 |
gagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagtaagaaccaatggaaaacatagggctaaatagtctttttca |
219 |
Q |
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| T |
46503055 |
gagacaaaagaaaaagtatgagataaagcagagagaattgtaacttccttacaaagaagcaagaaccaatggaaaacatagggctaaatagtctttttca |
46502956 |
T |
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| Q |
220 |
tccttaaatgttaaat-agtacatacatatattaaaattacaaaatcatatgtaaatttgtctttgnnnnnnnnaagtcatttgaattctcaagtcatgt |
318 |
Q |
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| T |
46502955 |
tccttaaatgttaaataagtacatacatatattaaaattacaaaatcatatgtaaatttgtctttgttttttttaagtcatttgaattctcaagtcatgt |
46502856 |
T |
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| Q |
319 |
gtttttagttagttagtttttgttatccctttgcttct |
356 |
Q |
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|||||||||| | |||||||||||||||||||| |||| |
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| T |
46502855 |
gtttttagttggctagtttttgttatccctttgattct |
46502818 |
T |
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