View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_24 (Length: 329)
Name: NF10916_high_24
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_24 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 34784157 - 34784455
Alignment:
| Q |
18 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34784157 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
34784256 |
T |
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| Q |
118 |
atggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
217 |
Q |
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| T |
34784257 |
atggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
34784356 |
T |
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| Q |
218 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34784357 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgtc |
34784455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 34775945 - 34776242
Alignment:
| Q |
18 |
cttcaaagcttctcataagtggaaaatcgacatgtttatcaacgcttattgaaggagcgcttcatgcaagttctatagacatgtggaagtcttcaaagaa |
117 |
Q |
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|||||||||||||||||||||||||| | ||||||||||| | || || ||||||| |||||| |||||||| |||||||||||| || |||||||| |
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| T |
34775945 |
cttcaaagcttctcataagtggaaaaccaacatgtttatcttcaattgttaaaggagcacttcatccaagttctttagacatgtggagttcctcaaagaa |
34776044 |
T |
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| Q |
118 |
atggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagt |
217 |
Q |
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| T |
34776045 |
atggttcaatgaagataaggaacaaacattgtttgagtgtgcaacaggggagagtttttgggattttcttaacaaagattctgaatctagtactttgagt |
34776144 |
T |
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| Q |
218 |
ttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgt |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||| || ||||| || || || ||||||||||| |||||||||||||| |
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| T |
34776145 |
atgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaagagaataaacgcgttttcgagggtttggagtctcttgttgatgt |
34776242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 315
Target Start/End: Complemental strand, 11445377 - 11445211
Alignment:
| Q |
149 |
tttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattcta |
248 |
Q |
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|||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||| |
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| T |
11445377 |
tttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctc |
11445278 |
T |
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| Q |
249 |
gaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgt |
315 |
Q |
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||| || || |||||||| | ||| ||| |||||||||| |||||||| ||| | |||||||| |
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| T |
11445277 |
aaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgt |
11445211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 11547713 - 11547879
Alignment:
| Q |
149 |
tttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttgagtttgtttcaagatgctatggctgctgattcta |
248 |
Q |
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|||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | ||||| |||||||||| |||||||||||||||||| |
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| T |
11547713 |
tttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctc |
11547812 |
T |
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| Q |
249 |
gaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggtttggaatctcttgttgatgt |
315 |
Q |
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||| || || |||||||| | ||| ||| |||||||||| |||||||| ||| | |||||||| |
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| T |
11547813 |
aaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgt |
11547879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 11507448 - 11507580
Alignment:
| Q |
115 |
gaaatggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttg |
214 |
Q |
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||||||| ||| |||||| ||| ||| | ||| |||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | || |
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| T |
11507448 |
gaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactg |
11507547 |
T |
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| Q |
215 |
agtttgtttcaagatgctatggctgctgattct |
247 |
Q |
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||| |||||||||| |||||||||||||||||| |
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| T |
11507548 |
agtatgtttcaagaggctatggctgctgattct |
11507580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 2105 - 2237
Alignment:
| Q |
115 |
gaaatggttcaatgaggataagaaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaagattctgaatctggtactttg |
214 |
Q |
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||||||| ||| |||||| ||| ||| | ||| |||||| | |||| |||||||| | |||||| | ||||||||||||| ||||||||| | || |
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| T |
2105 |
gaaatggctcactgaggagaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactg |
2204 |
T |
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| Q |
215 |
agtttgtttcaagatgctatggctgctgattct |
247 |
Q |
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||| |||||||||| |||||||||||||||||| |
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| T |
2205 |
agtatgtttcaagaggctatggctgctgattct |
2237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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