View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_32 (Length: 314)
Name: NF10916_high_32
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 31574336 - 31574623
Alignment:
| Q |
20 |
tatgggactcctccaccgcatgtttctccctgtaaaataatgaagaagaaaaatgaggataagcttataacacaattgaagnnnnnnnnntgaagtttgt |
119 |
Q |
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| T |
31574336 |
tatgggactcctccaccgcatgtttctccctgtaaaataatgaagtagaaaaatgaggataagcctataacacaattgaaggaaaaaaaatgaagtttgt |
31574435 |
T |
|
| Q |
120 |
gtataatggagaaagcagcacaatagaaggaacaaaaatctgtaatgttatgcatttggaaccgttgactccgcggtaacttattgatctgaaattgatg |
219 |
Q |
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| T |
31574436 |
gtataatggagaaagaagcacaatagaagggacaaaaatccgtaatgttgtgcatttggaaccgttgcctccgcggtaactttttgatctcaaattgatg |
31574535 |
T |
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| Q |
220 |
ccatagcaagcagcaaatcactaagattcatgtcatctgtttttctcatctttatctaaccatgttcaaaacaaagtatttgccctca |
307 |
Q |
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| T |
31574536 |
ccatagcaagcagccaatcactaagattcatgtcttctgtttttctcatctttatctaaccatgttcaaaacaaagcatttgccctca |
31574623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 6509149 - 6509393
Alignment:
| Q |
20 |
tatgggactcctccaccgcatgtttctccctgtaaaataatgaagaagaaaaatgaggataagcttataacacaattgaagnnnnnnnnntgaagtttgt |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
6509149 |
tatgggactcctccaccgcatgtttctccctttaaaataatgaagtagaaaaatgaggataagcctataacacaattgaagaaaaaaaa-tgatgtttgt |
6509247 |
T |
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| Q |
120 |
gtataatggagaaagcagcacaatagaaggaacaaaaatctgtaatgttatgcatttggaaccgttgactccgcggtaacttattgatctgaaattgatg |
219 |
Q |
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| T |
6509248 |
gtataatggagaaagaagcacaatagaagggacaaaaatccgttatgttgtgcattggaaaccgttgcctttgcggtaacttattgatctcaaattgatg |
6509347 |
T |
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| Q |
220 |
ccatagcaagcagcaaatcactaagattcatgtcatctgtttttct |
265 |
Q |
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| T |
6509348 |
ccataacaagcagccaatcactaagattcatgtcttctgtttttct |
6509393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 38028852 - 38028898
Alignment:
| Q |
255 |
tctgtttttctcatctttatctaaccatgttcaaaacaaagtatttg |
301 |
Q |
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| T |
38028852 |
tctgtttttctcatctttatctaaccatgttcaaaacaaagcatttg |
38028898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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