View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_high_5 (Length: 560)
Name: NF10916_high_5
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 55739186 - 55738649
Alignment:
| Q |
8 |
gacgtaggaagcaagaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtg |
107 |
Q |
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| T |
55739186 |
gacgtaggaagcaagaaagcaaattcagtagcaattgctcctgggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtg |
55739087 |
T |
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| Q |
108 |
gaataataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatc |
207 |
Q |
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| T |
55739086 |
gaataataagtgtagcagtggcatcattagaagtgatgaattcagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatc |
55738987 |
T |
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| Q |
208 |
ttctaagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttc |
307 |
Q |
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| T |
55738986 |
ttctaagaaatctaaagctttagaaagcacatctgctagaccactagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttc |
55738887 |
T |
|
| Q |
308 |
caaggtagtttcttgcattcattccaatccattagcctctcaccctcttgttttctgttcggtattatgaacaataatacagccaccataacctatatta |
407 |
Q |
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| T |
55738886 |
caaggtagtttcttgcattcattccaatccattagcctctcaccctcttgttttctgttcggtattatgaacaataatacagccaccataacctatatta |
55738787 |
T |
|
| Q |
408 |
tgaaaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagcacatatcggac |
507 |
Q |
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| T |
55738786 |
tgaaaaaatgacaaagtttaattgattaacaaacatgacattagcactagtttgtaatatagattatgtctcaactcttaaacactagcacatatcggac |
55738687 |
T |
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| Q |
508 |
accagacaagacttcaatctgaagacaaaagagagata |
545 |
Q |
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| T |
55738686 |
accagacacgacttcaatctgaagacaaaagagagata |
55738649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 50 - 390
Target Start/End: Complemental strand, 9381131 - 9380791
Alignment:
| Q |
50 |
gggatcataagaagaagaggatgtacatgcatagtcctagctatatgatatagaagtggaataataagtgtagcagtggcatcattagaagtgatgaatt |
149 |
Q |
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| T |
9381131 |
gggatcataagaagaagtggatgaacatgcatatttatggctatgtgatacaaaagtggaacaagaagtgtggctgtggcatcattggaagtgatgaatt |
9381032 |
T |
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| Q |
150 |
cagtaataatactacttataagactaactgcaggagcaattgccaaatatggggcatcttctaagaaatctaaagctttagaaagcacatctgctagacc |
249 |
Q |
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|||| ||||| |||| || |||||||| |||||| ||||||| || ||||| |||||| |||||| ||||| ||||| || | ||||| |||||||| |
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| T |
9381031 |
cagtgataatgctacatagtagactaacagcaggaacaattgctaagtatggaacatcttttaagaattctaaggcttttgacattacatcagctagacc |
9380932 |
T |
|
| Q |
250 |
actagattgaactccatcagctaaagcaaaaccagctccaagtaacaaaattaggttccaaggtagtttcttgcattcattccaatccattagcctctca |
349 |
Q |
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||||||||| |||||||| ||||| ||||| |||||||| || | ||||||||||||||| |||| || |||||||||||||| ||||||||| |||| |
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| T |
9380931 |
actagattgtactccatctgctaaggcaaatccagctcctagaagcaaaattaggttccatggtaactttttgcattcattccagtccattagcttctcc |
9380832 |
T |
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| Q |
350 |
ccctcttgttttctgttcggtattatgaacaataatacagc |
390 |
Q |
| |
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|| | ||| || |||| || |||||||| ||||| ||||| |
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| T |
9380831 |
ccattttgcttcatgtttgggattatgaataataagacagc |
9380791 |
T |
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