View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10916_high_7 (Length: 476)
Name: NF10916_high_7
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 460
Target Start/End: Original strand, 55096845 - 55097294
Alignment:
| Q |
11 |
tgagaagaagaatgtttcaggtaacagtttatgctgcaagtgtgacaggcaaaataagtttccccattttgagttgaataacaaatgcatttcctctagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55096845 |
tgagaagaagaatgtttcaggtaacagtttatgctgcaagtgtgacaggcaaaataagtttccccattttgagttgaataacaaatgcatttcctctagt |
55096944 |
T |
|
| Q |
111 |
cttcaatgcaatactatcttttacttgcttctccatcacattcaaaaacaagtttacaaattcatgctaatgaagaggctatatatgttgccgggtgtaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55096945 |
cttcaatgcaatactatcttttacttgcttctccatcacattcaaaaacaagtttacaaattcatgctaatgaagaggctatatatgttgccgagtgtaa |
55097044 |
T |
|
| Q |
211 |
ctacgatctttgacatccattaagcgctccaaggtataattacggcttaaaccatttgaatcctctatgagactaatcctcaagtcggcaacgggacatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
55097045 |
ctacgatctttgacatccattaagcgctccaaggtataattacggcttaaaccatttgaatcctctatgatactaatcctcaagtcggcagcgggacatc |
55097144 |
T |
|
| Q |
311 |
cgattttttcacatgggtgatatatatgttttagtttaacatctagtatgttctataccattgatgattcataccacttagtctttgaacttgaagcatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55097145 |
cgattttttcacatgggtgatatatatgttttagtttaacatctagtatgttctataccattgatgattcataccacttagtctttgaacttgaagcatg |
55097244 |
T |
|
| Q |
411 |
cttcattactagagtgataaaaagttggtatgctatcatagttaatgatg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55097245 |
cttcattactagagtgataaaaagttggtatgctatcatagttaatgatg |
55097294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 55095890 - 55095979
Alignment:
| Q |
330 |
atatatatgttttagtttaacatctagtatgttctataccattgatgattcataccacttagtctttgaacttgaagcatgcttcattac |
419 |
Q |
| |
|
||||| |||||| |||| |||||||||| | ||| |||||||||| ||||| || ||| |||||||||||||||||| ||||||||| |
|
|
| T |
55095890 |
atatacatgtttaagttcgacatctagtacatgctaaaccattgatgtttcatgccgtttaatctttgaacttgaagcatacttcattac |
55095979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 34858416 - 34858516
Alignment:
| Q |
32 |
taacagtttatgctgcaagtgtgacaggcaaaataagtttccccattttgagttgaataacaaatgcatttcctctagtcttcaatgcaatactatcttt |
131 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||| |||||| |||||| ||| ||||| || |||| || ||||||||||||||| ||||||||| |
|
|
| T |
34858416 |
taacagtttatgccacaagtgtaccaggaaaaataattttccctattttgggtttaataaaaattgcacctcagctagtcttcaatgcataactatcttt |
34858515 |
T |
|
| Q |
132 |
t |
132 |
Q |
| |
|
| |
|
|
| T |
34858516 |
t |
34858516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 27491468 - 27491515
Alignment:
| Q |
275 |
ctatgagactaatcctcaagtcggcaacgggacatccgattttttcac |
322 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| ||||||||||||||||| |
|
|
| T |
27491468 |
ctatgagactaatcctcgagttggcagcggaacatccgattttttcac |
27491515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University