View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10916_low_11 (Length: 448)

Name: NF10916_low_11
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10916_low_11
NF10916_low_11
[»] scaffold1683 (1 HSPs)
scaffold1683 (1-408)||(188-594)
[»] chr1 (10 HSPs)
chr1 (42-408)||(41527500-41527872)
chr1 (50-317)||(39889865-39890148)
chr1 (191-317)||(39882503-39882629)
chr1 (191-317)||(39897486-39897615)
chr1 (5-99)||(40096613-40096710)
chr1 (5-115)||(39882301-39882414)
chr1 (315-362)||(39890168-39890215)
chr1 (15-99)||(39897288-39897373)
chr1 (1-38)||(41527896-41527933)
chr1 (5-51)||(39889439-39889485)


Alignment Details
Target: scaffold1683 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold1683
Description:

Target: scaffold1683; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 594 - 188
Alignment:
Q  1 taaggattcactttgtctagactttaatcctcacctctaacactaacttttgaggtttaacttttaaagtctaaaatttaagatagtatcagagtctata 100  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  594 taaggattcactttgtctagactttaatcctcacctctcagactaacttttgaagtttaacttttaaagtctaaaatttaagatagtatcagagtctata 495  T
Q  101 cattaaaagatattagtgggaacatataaaaagagcc-gagcttcacaaataagcattttgtattattcagttcaaaaacgattatccaaccattttatt 199  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  494 cattaaaagatattagtgggaacata--aaaagagcctgagcttcacaaatgagcattttgtattattcagttcaaaaacgattgtccaaccattttatt 397  T
Q  200 aatgggaacaccaagagaaaacaaatcataactgtatgatgacattaatagtaactagtgatgtaacagtagtgtgttgtgcagcactcatagaaatggt 299  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||     
T  396 aacgggaacaccaagagaaatcaaatcataactgtatgatgacattaatagtaactagtgatgtaacagtagtgtgttttgcaacactcatagaaatggg 297  T
Q  300 gaagtggtatagaccatcttcctcaatttttgtatatcctagatgtagaaaaagtcagaaatgatgtatgagaaaaaactgtccgagtcgaaatacttga 399  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||     
T  296 gaagtggtatagaccatcttccttagtttttgtatatcctagatgtagaaaaagtcagaaatgatgtatgagataagattgtccgagtccaaatacttgg 197  T
Q  400 gaggtgact 408  Q
    |||||||||    
T  196 gaggtgact 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 42 - 408
Target Start/End: Complemental strand, 41527872 - 41527500
Alignment:
Q  42 actaacttttgaggtttaacttttaaagtctaaaatttaagatagtatcagagtctatacattaaaagatattagtgggaacatataaaaagagccgagc 141  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||   ||||    
T  41527872 actaacttttgatctttaacttttaaagtctaaaatttaagatagtatcagagtctatacattaaaagatattagtgggaacataaaaagagatt-gagc 41527774  T
Q  142 ttcacaaataagcattttgtattattca-------gttcaaaaacgattatccaaccattttattaatgggaacaccaagagaaaacaaatcataactgt 234  Q
    ||||||||| ||||||||||||||||||       |||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||||||     
T  41527773 ttcacaaatgagcattttgtattattcaacattgagttcaaaaacgattgtccatacattttattaacgggaacaccaagagaaaacaaatcataactga 41527674  T
Q  235 atgatgacattaatagtaactagtgatgtaacagtagtgtgttgtgcagcactcatagaaatggtgaagtggtatagaccatcttcctcaatttttgtat 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41527673 atgatgacattaatagtaactagtgatgtaacagtagtgtgttgtgcagcactcatagaaatggtgaagtggtatagaccatcttcctcaatttttgtat 41527574  T
Q  335 atcctagatgtagaaaaagtcagaaatgatgtatgagaaaaaactgtccgagtcgaaatacttgagaggtgact 408  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||||||||    
T  41527573 atcctagatgtagaaaaagtcagaaatgatgtatgagaaaagattgtccgagtccaaatacttgggaggtgact 41527500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 317
Target Start/End: Original strand, 39889865 - 39890148
Alignment:
Q  50 ttgaggtttaact---tttaaagtctaaaatttaagatagtatcagagtctatacattaaaagatattagtgggaacatataaaaagagccgag-ctt-- 143  Q
    |||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||  || |||||   ||||||| | |  |||      
T  39889865 ttgaggtttaactaattttaaagtctaaaatttaagatagtatcggagtctatacattaaaagatattaacggaaacatt--aaaagagtctaaacttta 39889962  T
Q  144 -----cacaaataagcattttgtattattca-------gttcaaaaacgattatccaaccattttattaatgggaacaccaagagaaaacaaatcataac 231  Q
         ||||||| ||||||||||||||||||       ||||| |||||||| ||||  ||||||||||||| ||||||||||||||||||||||| |||    
T  39889963 catgccacaaatgagcattttgtattattcaacactgagttcacaaacgattgtccatacattttattaatgagaacaccaagagaaaacaaatcaaaac 39890062  T
Q  232 tgtatgatgacattaatagtaactagtgatgtaacagtagtgtgttgtgcagcactcatagaaatggtgaagtggtatagaccatc 317  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39890063 tgtatgatgacattattagtaactagtgatgtaacagtagtgtgttgtgcagcactcatagaaatggtgaagtggtatagaccatc 39890148  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 39882503 - 39882629
Alignment:
Q  191 cattttattaatgggaacaccaagagaaaacaaatcataactgtatgatgacattaatagtaactagtgatgtaacagtagtgtgttgtgcagcactcat 290  Q
    |||||||||||  ||||||| || ||||||||||||| || |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  39882503 cattttattaaccggaacactaaaagaaaacaaatcaaaattgtatgatgatattattagtaactagggatgtaacagtagtgtgttgtgcagcactcat 39882602  T
Q  291 agaaatggtgaagtggtatagaccatc 317  Q
    ||||||| | |||||||| ||||||||    
T  39882603 agaaatgataaagtggtacagaccatc 39882629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 39897486 - 39897615
Alignment:
Q  191 cattttattaatgggaacaccaagagaaaacaaatcataactgtatgatgacattaata---gtaactagtgatgtaacagtagtgtgttgtgcagcact 287  Q
    ||||||||||| || ||| | ||||||||||||| || ||||||||||| ||| || ||   ||||  | |||| ||||| ||||||||| ||||||| |    
T  39897486 cattttattaacggaaacgctaagagaaaacaaaccagaactgtatgattacactattacaggtaataaatgatataacattagtgtgttttgcagcatt 39897585  T
Q  288 catagaaatggtgaagtggtatagaccatc 317  Q
    |||| |||||||||||||||| ||||||||    
T  39897586 catataaatggtgaagtggtaaagaccatc 39897615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 40096710 - 40096613
Alignment:
Q  5 gattcactttgtctagactttaatcctcacctctaacactaacttttgaggtttaact---tttaaagtctaaaatttaagatagtatcagagtctat 99  Q
    ||||||| |||||||||||||||||||||  |||   |||||||||||||||||| ||   || ||||||||||||||||||| |||| |||||||||    
T  40096710 gattcacattgtctagactttaatcctcatgtcttggactaacttttgaggtttagctagtttgaaagtctaaaatttaagatggtattagagtctat 40096613  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 39882301 - 39882414
Alignment:
Q  5 gattcactttgtctagactttaatcctcacctctaacactaacttttgaggtttaact---tttaaagtctaaaatttaagatagtatcagag-tctata 100  Q
    ||||||| ||||||| |||| | | |||||||||   |||||||||||||||||| ||   ||||||||||||| ||||||||||||| | || ||||||    
T  39882301 gattcacattgtctacacttgagtactcacctcttcaactaacttttgaggtttagctagctttaaagtctaaattttaagatagtat-atagttctata 39882399  T
Q  101 cattaaaagatatta 115  Q
    |||||||||||||||    
T  39882400 cattaaaagatatta 39882414  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 39890168 - 39890215
Alignment:
Q  315 atcttcctcaatttttgtatatcctagatgtagaaaaagtcagaaatg 362  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||    
T  39890168 atcttcctcaattttggtgtatcctagatgtagaaaaagtcagaaatg 39890215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 39897288 - 39897373
Alignment:
Q  15 gtctagactttaatcctcacctctaacactaacttttgaggtttaact---tttaaagtctaaaatttaagatagtatcagagtctat 99  Q
    ||||||||||||||||||||||||   ||||||||  |||||||| ||   ||||||||||||| |||||||| ||||||||||||||    
T  39897288 gtctagactttaatcctcacctcttgaactaactt--gaggtttagctaactttaaagtctaaattttaagatggtatcagagtctat 39897373  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41527933 - 41527896
Alignment:
Q  1 taaggattcactttgtctagactttaatcctcacctct 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41527933 taaggattcactttgtctagactttaatcctcacctct 41527896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 39889439 - 39889485
Alignment:
Q  5 gattcactttgtctagactttaatcctcacctctaacactaactttt 51  Q
    |||| |||||||||||||||||||||||||||||   ||||||||||    
T  39889439 gatttactttgtctagactttaatcctcacctctcggactaactttt 39889485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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