View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10916_low_12 (Length: 447)
Name: NF10916_low_12
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 19957293 - 19957714
Alignment:
| Q |
18 |
aaaaacacagtctgtttatctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatat |
117 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19957293 |
aaaaacaaagtctgtttagctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatat |
19957392 |
T |
|
| Q |
118 |
catcaaatatggatggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19957393 |
catcaaatatggatggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaag |
19957492 |
T |
|
| Q |
218 |
tgttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19957493 |
tgttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaa |
19957592 |
T |
|
| Q |
318 |
aaggttgaaaatatttgatccaattttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19957593 |
aaggttgaaaatatttgatccaattttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccc |
19957692 |
T |
|
| Q |
418 |
tttttcttgtgcagcctatgct |
439 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19957693 |
tttttcttgtgcagcctatgct |
19957714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 20035461 - 20035074
Alignment:
| Q |
30 |
tgtttatctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatcatcaaatatgg |
129 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| | |||||||||||||||||||||| ||||||||||||||| || ||||||||| || ||| |
|
|
| T |
20035461 |
tgtttatctgagactcaaggtgaaatttgtagctatgctgtgagaaatgaagtctctttgtctaattctgaatttggtgattttatatcatcatatgtgg |
20035362 |
T |
|
| Q |
130 |
atggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttt |
229 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
20035361 |
atggtgaaatagctggatgtggtgatgaagatgaaataaagagtccattttatgatagaaatgatgtcaatgacatcaatggggaaaatgttgagccttt |
20035262 |
T |
|
| Q |
230 |
tacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaat |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20035261 |
tacactagacatggaatttgatcttgaaaacagaatggaaaagcttgaaagagtggtttctaagcttaaagaagcaagatttggccaaaaggttgaaaat |
20035162 |
T |
|
| Q |
330 |
atttgatccaa--------ttttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaa |
409 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
20035161 |
gtttgatccaacaatgtttttttgctggtatagaactaacttcatattcctaattatgtgtaatagtttacaattatttgattgctaa |
20035074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 19819726 - 19820153
Alignment:
| Q |
20 |
aaacacagtctgtttatctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatca |
119 |
Q |
| |
|
||||| ||||||||||||||| |||| | |||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
19819726 |
aaacaaagtctgtttatctgacactcgggttgaaagttgtcgctatgctatcagaaatcaagtctctttgtctagttctgaatttggtgattttatatca |
19819825 |
T |
|
| Q |
120 |
tcaaatatggatggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtg |
219 |
Q |
| |
|
||||| ||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
19819826 |
tcaaaagtggatggtgaaatagttggatgtggtgatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggcgaaaatg |
19819925 |
T |
|
| Q |
220 |
ttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaa |
319 |
Q |
| |
|
|||| | |||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19819926 |
ttgagcgttttacactagagatggtacttgatcttgaaaacaggatcgagaagcttgaaagagtggtttctaagctcaaagaagcaagatttggccaaaa |
19820025 |
T |
|
| Q |
320 |
ggttgaaaatatttgatccaa--------ttttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaata |
411 |
Q |
| |
|
| |||||||| ||||||| || |||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||| | |||||||||| || |
|
|
| T |
19820026 |
gtttgaaaatgtttgatctaacaatgtttttttgctggtgtagaaccaacttcatattcctaattatgtgtaatagtttacaattacttgattgctatta |
19820125 |
T |
|
| Q |
412 |
gtaccctttttcttgtgcagcctatgct |
439 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
19820126 |
gttccctttttcttgtgcagcctatgct |
19820153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 26 - 437
Target Start/End: Original strand, 19839649 - 19840068
Alignment:
| Q |
26 |
agtctgtttatctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatcatcaaat |
125 |
Q |
| |
|
|||||||||| ||||||||||||||| || |||||| ||||||||||||| |||||||| ||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
19839649 |
agtctgtttacttgagactcaaggtgatagttgtagctatgctatcagaaacgaagtctcattgtctaattctgaatttggtgattttatatcatcaaat |
19839748 |
T |
|
| Q |
126 |
atggatggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatc |
225 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
19839749 |
gtggatggtgaaatggctggatgctgtgatgaagatgaaatcaagagtctattttatgatagaaatgatgtcaatgacatcaatggggaaattgttgagc |
19839848 |
T |
|
| Q |
226 |
cttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttga |
325 |
Q |
| |
|
||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
19839849 |
cttttacactaaacatggaaattgatcttgaaaacaggatcgagaagcttgaaagagtggtttctaaacttaaagaagcaagatttggccaaaaggttta |
19839948 |
T |
|
| Q |
326 |
aaatatttgatccaa--------ttttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagtaccc |
417 |
Q |
| |
|
| || ||||||||| |||||||||||||||||||||||| ||||| ||||||| || ||| ||||||||| |||||||||||||| || ||| |
|
|
| T |
19839949 |
acatgattgatccaacaatgcttttttgctggtatagaaccaacttcatattcctaattatatgcaatagtttacaattatttgattgctaatggttccc |
19840048 |
T |
|
| Q |
418 |
tttttcttgtgcagcctatg |
437 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
19840049 |
tttttcttgtgcaacctatg |
19840068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 67 - 414
Target Start/End: Original strand, 19833067 - 19833419
Alignment:
| Q |
67 |
ctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatcatcaaatatggatggtgaaatagctggattttgtgatgaagatgaaat |
166 |
Q |
| |
|
|||| ||||| ||||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||| | || | | ||||||||||||| |
|
|
| T |
19833067 |
ctattagaaacgaagtatctttgtctaattctgaatttggtgattttatatcatcaaatgtggatggtgaaatagccgaatgtggggatgaagatgaaag |
19833166 |
T |
|
| Q |
167 |
caagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgatcttgaaaacaggatt |
266 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
19833167 |
caagagtccactttataatagaattgatgtcaattacatcaatggggaaagtgttgagccttttacactagacatgatatttgatcttgaaaacagaatt |
19833266 |
T |
|
| Q |
267 |
gagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa---------ttttgctggtatagaac |
357 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||| | |
|
|
| T |
19833267 |
gagaagcttgaaagagtgttttctaagcttaaagaagaaagatttggccaaaaggttgaaaatgtttgatccaacaatgctttttttgctggcatagagc |
19833366 |
T |
|
| Q |
358 |
caacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagta |
414 |
Q |
| |
|
|||||| | ||| ||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
19833367 |
aaacttcattttcctaattatgtgtaa----taacaattatttgattgctaatagta |
19833419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 33 - 340
Target Start/End: Original strand, 19850235 - 19850542
Alignment:
| Q |
33 |
ttatctgagactcaaggtgaaagctgtagcgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatcatcaaatatggatg |
132 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||| ||| ||||||| ||||||| || |||||||||||| ||||| |
|
|
| T |
19850235 |
ttatctgagactcaaggtgaaagcagaagcaatggtatcagaaacaaagtctctttgcctaattctgaacttggtgattttatatcatcaaatgtggatc |
19850334 |
T |
|
| Q |
133 |
gtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttac |
232 |
Q |
| |
|
|| |||||||||||| | | ||||||||||||||||||| |||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||||| |
|
|
| T |
19850335 |
gtcaaatagctggatgtggggatgaagatgaaatcaagaatccattttgtgatggaaatgatgtccatgacatcagtggggaaggtgttgatccttttag |
19850434 |
T |
|
| Q |
233 |
actagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatt |
332 |
Q |
| |
|
| || |||| | |||||||||||||||||||||||||||| |||| | ||| | |||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
19850435 |
agtatacatagaatttgatcttgaaaacaggattgagaagtttgataaagtgttgtctaagcttaaagaagcaagatttggccaaaaggttgaaattgtt |
19850534 |
T |
|
| Q |
333 |
tgatccaa |
340 |
Q |
| |
|
|||||||| |
|
|
| T |
19850535 |
tgatccaa |
19850542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 19813662 - 19813795
Alignment:
| Q |
245 |
atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa---- |
340 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
19813662 |
atttgatcttgaaaacaggattgagaaacttgaaagagtgttttctaagctcaaagaagcaagatttggccgaaaggttgaaaatgtttgatccaacaat |
19813761 |
T |
|
| Q |
341 |
----ttttgctggtatagaaccaacttcttattc |
370 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |
|
|
| T |
19813762 |
gcttttttgctgatatagaaccaacttcatattc |
19813795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 298
Target Start/End: Complemental strand, 20006112 - 20005917
Alignment:
| Q |
102 |
tttggtgaattcatatcatcaaatatggatggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacg |
201 |
Q |
| |
|
|||||||| || |||||||||||| | | ||||||| ||||||||| | | |||||||||||||||| | |||||||| |||||||||||||||| | | |
|
|
| T |
20006112 |
tttggtgattttatatcatcaaatgttggtggtgaa-tagctggatgtgggaatgaagatgaaatcaaaaatccattttgtgatagaaatgatgtcgatg |
20006014 |
T |
|
| Q |
202 |
acatcaatggggaaagtgttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaa |
298 |
Q |
| |
|
||| ||||||||| ||||| |||||||||| |||| |||| ||||||||||||| | |||||| ||||||||||| |||| ||||||| ||||| |
|
|
| T |
20006013 |
ccattaatggggaaggtgttagtccttttacattagatatggcatttgatcttgaagagaggattaagaagcttgaacgagtattttctaaccttaa |
20005917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 19964078 - 19964156
Alignment:
| Q |
245 |
atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggtt |
323 |
Q |
| |
|
|||||| ||||||||||| ||| |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19964078 |
atttgaacttgaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt |
19964156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 20026346 - 20026268
Alignment:
| Q |
245 |
atttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggtt |
323 |
Q |
| |
|
|||||| ||||||||||| ||| |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20026346 |
atttgaacttgaaaacagaattcagaatcttgaaggagaggttgctaagcttaaagaagcaagatttggccaaaaggtt |
20026268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 327
Target Start/End: Original strand, 19968702 - 19968817
Alignment:
| Q |
212 |
ggaaagtgttgatccttttacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagattt |
311 |
Q |
| |
|
||||||||| | |||||| | | ||||||| | ||||||| ||||||||||||| |||| |||||||||| ||| ||||||| ||| ||||||||||| |
|
|
| T |
19968702 |
ggaaagtgtcggtcctttgatattagacatcgcatttgatgttgaaaacaggatcaagaaacttgaaagagaggttgctaagctcaaacaagcaagattt |
19968801 |
T |
|
| Q |
312 |
ggccaaaaggttgaaa |
327 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
19968802 |
ggctctaaggttgaaa |
19968817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 327
Target Start/End: Complemental strand, 20019645 - 20019479
Alignment:
| Q |
152 |
tgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttttacactagacatggtatttgat |
251 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| |||||| | | ||||||| | ||||||| |
|
|
| T |
20019645 |
tgatgaagatgaaatcaagagtctattttgtgatagaaatggtgagaaaga---------ggaaagtgttggtcctttgatattagacatcgcatttgat |
20019555 |
T |
|
| Q |
252 |
cttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaa |
327 |
Q |
| |
|
|||||||||| || |||| |||||||||| ||| ||||||| || |||||||||||||| |||||||||| |
|
|
| T |
20019554 |
gttgaaaacagaatccagaaacttgaaagagaggttgctaagctcaatcaagcaagatttggctctaaggttgaaa |
20019479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 19813583 - 19813629
Alignment:
| Q |
133 |
gtgaaatagctggattttgtgatgaagatgaaatcaagagtccattt |
179 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
19813583 |
gtgaaatagctggatgtggggatgaagatgaaatcaagagtccattt |
19813629 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 14855632 - 14855592
Alignment:
| Q |
152 |
tgatgaagatgaaatcaagagtccattttatgatagaaatg |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
14855632 |
tgatgaagatgaaatcaagagtctattttgtgatagaaatg |
14855592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 19742971 - 19742879
Alignment:
| Q |
235 |
tagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaa |
327 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||| || ||||||| ||| ||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
19742971 |
tagacattgcatttgatgttgaaaacaggattgagaaactcgaaagagaggttgtgaagctcaaacaagcaagatttggctctaaggttgaaa |
19742879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 26648311 - 26648341
Alignment:
| Q |
26 |
agtctgtttatctgagactcaaggtgaaagc |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26648311 |
agtctgtttatctgagactcaaggtgaaagc |
26648341 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 19968651 - 19968691
Alignment:
| Q |
152 |
tgatgaagatgaaatcaagagtccattttatgatagaaatg |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||| |
|
|
| T |
19968651 |
tgatgaagatgaaatcaagagtctattttgtgataggaatg |
19968691 |
T |
|
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Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 33 - 413
Target Start/End: Original strand, 27472985 - 27473376
Alignment:
| Q |
33 |
ttatctgagactcaaggtgaaagctgtag---cgatgctatcagaaatgaagtctctttgtctagttctgaatttggtgaattcatatcatcaaatatgg |
129 |
Q |
| |
|
|||||||||||||||||||||||| | || | ||| ||||||||| |||||||||| |||| ||||||| ||||||| || |||||||||||| ||| |
|
|
| T |
27472985 |
ttatctgagactcaaggtgaaagcagaagaagctatggtatcagaaacaaagtctctttttctaattctgaacttggtgattttatatcatcaaatgtgg |
27473084 |
T |
|
| Q |
130 |
atggtgaaatagctggattttgtgatgaagatgaaatcaagagtccattttatgatagaaatgatgtcaacgacatcaatggggaaagtgttgatccttt |
229 |
Q |
| |
|
||||||||||||| ||| | | ||||||||||||||||||| | |||||| |||| |||||||||||| ||||||| |||||||||| ||||||| || |
|
|
| T |
27473085 |
atggtgaaatagcaagatatggggatgaagatgaaatcaagaattcattttgtgatgaaaatgatgtcaatgacatcagtggggaaagtattgatccatt |
27473184 |
T |
|
| Q |
230 |
tacactagacatggtatttgatcttgaaaacaggattgagaagcttgaaagagttgtttctaagcttaaagaagcaagatttggccaaaaggttgaaaat |
329 |
Q |
| |
|
|| | || |||||| |||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27473185 |
tagagtatacatggaatttgatcttgaaaacaggattcagaagcttgaaaaaaggttctctaagcttaaagaagcaagatttggccaaaaggttgaaact |
27473284 |
T |
|
| Q |
330 |
atttgatccaa--------ttttgctggtatagaaccaacttcttattcttaattatgtgtaatggtttacaataatttgattgctaatagt |
413 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| ||||||||| |||| ||||||| |||| |
|
|
| T |
27473285 |
gtttgatccaacaatgcttttttgctggtatagaaccaacttcatatttctaattttgtgtaatagtttacaatgatttaattgctagtagt |
27473376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 9816230 - 9816260
Alignment:
| Q |
26 |
agtctgtttatctgagactcaaggtgaaagc |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9816230 |
agtctgtttatctgagactcaaggtgaaagc |
9816260 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 26353852 - 26353822
Alignment:
| Q |
26 |
agtctgtttatctgagactcaaggtgaaagc |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26353852 |
agtctgtttatctgagactcaaggtgaaagc |
26353822 |
T |
|
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Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 291 - 398
Target Start/End: Complemental strand, 22655479 - 22655360
Alignment:
| Q |
291 |
aagcttaaagaagcaagatttggccaaaaggttgaaaatatttgatccaa------------ttttgctggtatagaaccaacttcttattcttaattat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22655479 |
aagcttaaagaagcaagatttggccaaaaggttgaaaatgtttgatacaaaaatgtttttttttttgctggtatggaaccaacttcatattcttaattat |
22655380 |
T |
|
| Q |
379 |
gtgtaatggtttacaataat |
398 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
22655379 |
gtgtaatagtttacaataat |
22655360 |
T |
|
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