View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_13 (Length: 433)
Name: NF10916_low_13
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_13 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 39559628 - 39559218
Alignment:
| Q |
17 |
ataatttataagcgagcatgttctgagatgagataagaggcattctggaacaatagttggatcctcccaatcttcgtcatcatcactactgtttactata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559628 |
ataatttataagcgagcatgttctgagatgagataagaggcattctggaacaatagttggatcctcccaatcttcgtcatcatcactactgtttactata |
39559529 |
T |
|
| Q |
117 |
tcatcatcatcatgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttgaacgaggcgagttcgcagaagtcta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559528 |
tcatcatcatcatgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttgaacgaggcgagttcgcagaagtcta |
39559429 |
T |
|
| Q |
217 |
atataagctccagatgggttaaattgtgaaacatgccatgtaaataacagggggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39559428 |
atataagctccagatgggttaaattgtgaaacatgccatgtaaataacagggggaggtctctcgtatgcggagatggctcacgttataaagccaatcaaa |
39559329 |
T |
|
| Q |
317 |
ctcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctctctacctgtacgaatcaccttacaaagtgccgtaaggattaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
39559328 |
ctcgatggaacctttggaaatgttagctctgaccaaattggataggtttagaacctctctagctgtacgaataaccttacaaagtgccgtaaggattaca |
39559229 |
T |
|
| Q |
417 |
tcctttgcttc |
427 |
Q |
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||||||||||| |
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| T |
39559228 |
tcctttgcttc |
39559218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 427
Target Start/End: Complemental strand, 50814979 - 50814827
Alignment:
| Q |
275 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
374 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50814979 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50814880 |
T |
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| Q |
375 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgcttc |
427 |
Q |
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|||||||||||||||||| ||||| || ||||| ||||||||||||||||| |
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| T |
50814879 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttc |
50814827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 50860885 - 50861037
Alignment:
| Q |
275 |
ctctcgtatgcggagatggctcacgttataaagccaatcaaactcgatggaacctttggaaatgttagctctgaccagattggataggtttagaacctct |
374 |
Q |
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|||| ||||||||||| | ||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50860885 |
ctcttgtatgcggagaagattcacgttataaagccaatcaaactcaagtaaaccattggaaatgttagctctgaccaaattggataggtttagaacctct |
50860984 |
T |
|
| Q |
375 |
ctacctgtacgaatcaccttacaaagtgccgtaaggattacatcctttgcttc |
427 |
Q |
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|||||||||||||||||| ||||| || ||||| ||||||||||||||||| |
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| T |
50860985 |
ctacctgtacgaatcaccatacaacgtctcgtaactattacatcctttgcttc |
50861037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 50815411 - 50815338
Alignment:
| Q |
17 |
ataatttataagcgagcatgttctgagatgagataagaggcattctggaacaatagttggatcctcccaatctt |
90 |
Q |
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||||||| ||| ||||||||| | ||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
50815411 |
ataatttcgaagggagcatgttgtaagatgagataaaaggcattctggaacaattgttgggtcctcccaatctt |
50815338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 50860453 - 50860526
Alignment:
| Q |
17 |
ataatttataagcgagcatgttctgagatgagataagaggcattctggaacaatagttggatcctcccaatctt |
90 |
Q |
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||||||| ||| ||||||||| | ||||||||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
50860453 |
ataatttcgaagggagcatgttgtaagatgagataaaaggcattctggaacaattgttgggtcctcccaatctt |
50860526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 49868244 - 49868308
Alignment:
| Q |
128 |
atgaatgataagagtttgaagtttggggaaatattgaaattgttccatcagccagttccacttga |
192 |
Q |
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|||||||||||||||||||||||| ||||||| || || |||| ||||||||||||||||||| |
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| T |
49868244 |
atgaatgataagagtttgaagtttagggaaattttcaagcagttcaatcagccagttccacttga |
49868308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 49856951 - 49856999
Alignment:
| Q |
210 |
aagtctaatataagctccagatgggttaaattgtgaaacatgccatgta |
258 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||| || ||||| |
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| T |
49856951 |
aagtccaatctaagctccaggtgggttaaattgtgaaacacgctatgta |
49856999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 2380 - 2408
Alignment:
| Q |
131 |
aatgataagagtttgaagtttggggaaat |
159 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2380 |
aatgataagagtttgaagtttggggaaat |
2408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 3926 - 3954
Alignment:
| Q |
131 |
aatgataagagtttgaagtttggggaaat |
159 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3926 |
aatgataagagtttgaagtttggggaaat |
3954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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