View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_19 (Length: 380)
Name: NF10916_low_19
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 28491602 - 28491945
Alignment:
| Q |
19 |
cacatataccactgagccatgaggttggttgtctaaccaattcttgatcccttgccatgtgtcattttcatcaacaaagttaaactctgtgctagggagt |
118 |
Q |
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| T |
28491602 |
cacatataccactgagccatgaggttggttgtctaaccacttcttgatcccttgccatgtgtcattttcatcaacaaagttaaaccctgtgctagggagt |
28491701 |
T |
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| Q |
119 |
tgaccggcaggtagaactggtttcttgagaaggttttggaggagttcaaaccactcaggttcaaattcagtacaaccacgaatcaaaatggtgtcgcagt |
218 |
Q |
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| T |
28491702 |
tgaccggcaggtagaactggtttctggagaaggttttggaggagttcaaaccactcaggttcaaattcagtacaaccacgaatcaaaatggtgtcgcagt |
28491801 |
T |
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| Q |
219 |
tctgaacacaagaactaacacgatgcatttcagaaacacccgagtcctttttgtagaaaacttctgcgttcttcttaatctcaaagtatttgtatgccac |
318 |
Q |
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| T |
28491802 |
tttgaacacaagaactaacacgatgcatttcagaaacacctgagtcctttttggagaaaacttccgcgttcttcttaatctcaaagtatttgtatgccac |
28491901 |
T |
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| Q |
319 |
tgtagtcttaaatggaatccacggtggtggagccgtgtagtcct |
362 |
Q |
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| T |
28491902 |
tgtagtattaaatggaatccacggtggtggagccgtgtagtcct |
28491945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 28507468 - 28507656
Alignment:
| Q |
20 |
acatataccactgagccatgaggttggttgtctaaccaattcttgatcccttgccatgtgtcattttcatcaacaaagttaaactctgtgctagggagtt |
119 |
Q |
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| T |
28507468 |
acatataccactgtgccatgtggttgcttgtccaaccactcctttatcctcggccatgagtcattttcatggccgctgtcaaactccgtgttggggagct |
28507567 |
T |
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| Q |
120 |
gaccggcaggtagaactggtttcttgagaaggttttggaggagttcaaaccactcaggttcaaattcagtacaaccacgaatcaaaatg |
208 |
Q |
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| T |
28507568 |
gaccggcagggagaactgttttctggtgaatgttttggatcacttgaaaccattcgggttcaaattcagtacaaccacggatcaaaatg |
28507656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 28495002 - 28495110
Alignment:
| Q |
100 |
aaactctgtgctagggagttgaccggcaggtagaactggtttcttgagaaggttttggaggagttcaaaccactcaggttcaaattcagtacaaccacga |
199 |
Q |
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| T |
28495002 |
aaactccgtgctaaggagctgaccggcgggaagaactaatttgttgtgaatattttggatcacttgaaaccactcaggttcaaattcggtacaaccacga |
28495101 |
T |
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| Q |
200 |
atcaaaatg |
208 |
Q |
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| T |
28495102 |
atcaaaatg |
28495110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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