View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_2 (Length: 675)
Name: NF10916_low_2
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 645; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Original strand, 10265584 - 10266244
Alignment:
| Q |
1 |
ccaagatgaaaatggtcaagcccaagatccagtaaaccaccaacaaaccatccggaaggctcgggctgaccacgcgcactaatttcattgcgcgctacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10265584 |
ccaagatgaaaatggtcaagcccaagatccagtaaaccaccaacaaaccatccggaaggctcgggctgaccacgcgcactaatttcattgcgtgctacat |
10265683 |
T |
|
| Q |
101 |
gatcaatttctgaatatcctatcacaattggaccgcgaaacaaaaccattaaaacggcaccagaaacacagataagtgttcctagaacctttgccaagcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265684 |
gatcaatttctgaatatcctatcacaattggaccgcgaaacaaaaccattaaaacggcaccagaaacacagataagtgttcctagaacctttgccaagcc |
10265783 |
T |
|
| Q |
201 |
ttcagatctgagcaagttcactctttctgtactgcattaaaaagtttaataaggtatgtattactgtatgtcctggtttatccgtataagtttattaatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265784 |
ttcagatctgagcaagttcactctttctgtactgcattaaaaagtttaataaggtatgtattactgtatgtcctggtttatccgtataagtttattaata |
10265883 |
T |
|
| Q |
301 |
attcacatagtgcaatttgtgtttgtgtttttatgatacacaaaactgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10265884 |
attcacatagtgcaatttgtgtttgtgtttttatgatacacaaaactgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgt |
10265983 |
T |
|
| Q |
401 |
ggcagcagcataagttggatttgtatagcttaaaccaatgagaaacagaagctggttgccaaatatcctggtcatgaatcacaaagcaaaaatatcacac |
500 |
Q |
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| T |
10265984 |
ggcagcagcataagttggatttgtatagcttaaaccaatgagaaacagaagctggttgccaaatatcctggtcatgaatcacaaagcaaaaatatcacac |
10266083 |
T |
|
| Q |
501 |
ctgtcaataaaagattctctccctcgtatgcgaagaaaataggaactaagtgactagtataaaaaacctcacccagttaatccaagaaagaagaatgatg |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10266084 |
ctgtcaataaaagattctctccctcgtatgcgaagaagataggaactaagtgactagtataaaaaacctcacccagttaatccaagaaagaagaatgatg |
10266183 |
T |
|
| Q |
601 |
tcaggaggttcttagtaatgggcggtcgtgttcgtcttcagccatcatggtatgataaaaa |
661 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10266184 |
tcaggaggttcttagtaatgggtggtcgtgttcgtcttcagccatcatggtatgataaaaa |
10266244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 346 - 470
Target Start/End: Complemental strand, 10286519 - 10286395
Alignment:
| Q |
346 |
ctgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgtggcagcagcataagttggatttgtatagcttaaaccaatgagaaa |
445 |
Q |
| |
|
|||||| ||| || ||||| | || ||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||| | ||||||||| ||||| |
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| T |
10286519 |
ctgaccgcatgatcacagcaagcagaaaggtaaagactggaacagcaggctgtaaggcagctgcataagttggatttgtataacctaaaccaataagaaa |
10286420 |
T |
|
| Q |
446 |
cagaagctggttgccaaatatcctg |
470 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
10286419 |
caacagctggttgccaaatatcctg |
10286395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 375 - 481
Target Start/End: Original strand, 10280941 - 10281047
Alignment:
| Q |
375 |
gtaaagactggaatggcaggctgtgtggcagcagcataagttggatttgtatagcttaaaccaatgagaaacagaagctggttgccaaatatcctggtca |
474 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| |
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| T |
10280941 |
gtaaagacaggaatagcaggctgtaacgcagcggcataagttggattagtataacttaaaccaataagaaacaggagctggtttccaaatatcctgatca |
10281040 |
T |
|
| Q |
475 |
tgaatca |
481 |
Q |
| |
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| ||||| |
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|
| T |
10281041 |
taaatca |
10281047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 10280374 - 10280482
Alignment:
| Q |
129 |
tggaccgcgaaacaaaaccattaaaacggcaccagaaacacagataagtgttcctagaacctttgccaagccttcagatctgagcaagttcactctttct |
228 |
Q |
| |
|
|||||||||| |||||||||| || || ||||| || ||||| ||||| |||||| ||||||||||| |||||||| || |||||||||||||||| |
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| T |
10280374 |
tggaccgcgatacaaaaccatcaatacagcacccgagacacatataagagttcctccaacctttgccagaccttcagaactcttcaagttcactctttct |
10280473 |
T |
|
| Q |
229 |
gtactgcat |
237 |
Q |
| |
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||||||| |
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| T |
10280474 |
acactgcat |
10280482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 475
Target Start/End: Complemental strand, 10294442 - 10294313
Alignment:
| Q |
346 |
ctgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgtggcagcagcataagttggatttgtatagcttaaaccaatgagaaa |
445 |
Q |
| |
|
|||||||||| || ||||| | | ||| |||||||| ||||| | ||||||| ||||| |||||||||||||||||||| | ||||||| ||||| |
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|
| T |
10294442 |
ctgaccccatgatgacagcaagtagaaaggtaaagacaggaatagaaggctgtaaggcagaggcataagttggatttgtataacctaaaccataaagaaa |
10294343 |
T |
|
| Q |
446 |
cagaagctggttgccaaatatcctggtcat |
475 |
Q |
| |
|
|| | |||| |||||||||||||| |||| |
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| T |
10294342 |
caacacctggctgccaaatatcctgatcat |
10294313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 475
Target Start/End: Complemental strand, 10302198 - 10302069
Alignment:
| Q |
346 |
ctgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgtggcagcagcataagttggatttgtatagcttaaaccaatgagaaa |
445 |
Q |
| |
|
|||||||||| || ||||| | | ||| |||||||| ||||| | ||||||| ||||| |||||||||||||||||||| | ||||||| ||||| |
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| T |
10302198 |
ctgaccccatgatgacagcaagtagaaaggtaaagacaggaatagaaggctgtaaggcagaggcataagttggatttgtataacctaaaccataaagaaa |
10302099 |
T |
|
| Q |
446 |
cagaagctggttgccaaatatcctggtcat |
475 |
Q |
| |
|
|| | |||| |||||||||||||| |||| |
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|
| T |
10302098 |
caacacctggctgccaaatatcctgatcat |
10302069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 619
Target Start/End: Original strand, 10281121 - 10281175
Alignment:
| Q |
565 |
aacctcacccagttaatccaagaaagaagaatgatgtcaggaggttcttagtaat |
619 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| || ||||||||||| |
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|
| T |
10281121 |
aaccttacccagttaatccaagaaagaagaatgacatcaatagcttcttagtaat |
10281175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 470
Target Start/End: Complemental strand, 30581074 - 30580947
Alignment:
| Q |
343 |
aaactgaccccataattacagcgaacaaaaatgtaaagactggaatggcaggctgtgtggcagcagcataagttggatttgtatagcttaaaccaatgag |
442 |
Q |
| |
|
||||| ||||||| |||| ||| ||||| ||||||||||| ||| | || ||||| | |||||||||||||||||||| |||||||| |||||||| || |
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|
| T |
30581074 |
aaactaaccccatcattatagccaacaagaatgtaaagacgggagtagctggctgaattgcagcagcataagttggattagtatagctcaaaccaataag |
30580975 |
T |
|
| Q |
443 |
aaacagaagctggttgccaaatatcctg |
470 |
Q |
| |
|
||||| ||| || || |||||||||||| |
|
|
| T |
30580974 |
aaacaaaagatgatttccaaatatcctg |
30580947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 30581258 - 30581196
Alignment:
| Q |
186 |
aacctttgccaagccttcagatctgagcaagttcactctttctgtactgcattaaaaagttta |
248 |
Q |
| |
|
|||||| |||| |||||| |||| ||||||||||||||||||||||||||| || ||||||| |
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|
| T |
30581258 |
aaccttggccagaccttcatatcttagcaagttcactctttctgtactgcatgaataagttta |
30581196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 603
Target Start/End: Complemental strand, 30580858 - 30580817
Alignment:
| Q |
562 |
aaaaacctcacccagttaatccaagaaagaagaatgatgtca |
603 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| |||||||||| |
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|
| T |
30580858 |
aaaaaccttacccagttaatccgagaaagaaaaatgatgtca |
30580817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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