View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_20 (Length: 370)
Name: NF10916_low_20
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 48487291 - 48486948
Alignment:
| Q |
20 |
gcttggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaa |
119 |
Q |
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| T |
48487291 |
gcttggacacttgtgaaaccaggtgaaggtggtgttggtaaaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaa |
48487192 |
T |
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| Q |
120 |
gttatattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttga |
219 |
Q |
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| T |
48487191 |
gttatattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttga |
48487092 |
T |
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| Q |
220 |
tgatgtgaaagctattaaagtaaaagtatcttatgcaaagaaaaatggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctt |
319 |
Q |
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| T |
48487091 |
tgatgtgaaagctattaaagtaaaagtatcttatgcaaagaaaaatggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctt |
48486992 |
T |
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| Q |
320 |
tcaaaggcaggtaactttttctatcctctcagttccctttgctt |
363 |
Q |
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| T |
48486991 |
tcaaaggcaggtaactttttctatcctctcagttccctttgctt |
48486948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 333
Target Start/End: Complemental strand, 48470457 - 48470150
Alignment:
| Q |
23 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagtt |
122 |
Q |
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| T |
48470457 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgcttttacaatggatggttcaatgtcttataagtttataaaaagtt |
48470358 |
T |
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| Q |
123 |
atattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttgatga |
222 |
Q |
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| T |
48470357 |
acattagaggctttggtgatggagtagtttcacgttataatgacacttttgtggtgaattatttcactgttgcat---ctacttgggttaattttgatga |
48470261 |
T |
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| Q |
223 |
tgtgaaagctattaaagtaaaagtatcttatgcaaagaaaaatggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctttca |
322 |
Q |
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|||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |
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| T |
48470260 |
tgtggaagctattaaagaaaaagtttcttatgcaaagaaaaatggattacttggttacagtgtgttccaagttgggaatgatgacaattgggtcctttca |
48470161 |
T |
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| Q |
323 |
aaggcaggtaa |
333 |
Q |
| |
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| T |
48470160 |
acggcaggtaa |
48470150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 48478819 - 48478514
Alignment:
| Q |
23 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagtt |
122 |
Q |
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| T |
48478819 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatggcttataagtttataaaaagtt |
48478720 |
T |
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| Q |
123 |
atattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttgatga |
222 |
Q |
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| T |
48478719 |
acatcagaggctttggtgatggagtagtttcacgttataatgacacttttgtggtgaattatttcactgttgaat---ctacatgggttaattttgatga |
48478623 |
T |
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| Q |
223 |
tgtgaaagctattaaagtaaaagtatcttatgcaaagaaaaatggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctttca |
322 |
Q |
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|||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
48478622 |
tgtggaagctattaaagaaaaagtttcttatgcaaagaaaaatggattacttggttacagtgtgttccaagttgggagtgatgacaattgggtcctttca |
48478523 |
T |
|
| Q |
323 |
aaggcaggt |
331 |
Q |
| |
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| T |
48478522 |
acggcaggt |
48478514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 48883464 - 48883716
Alignment:
| Q |
23 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagtt |
122 |
Q |
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| T |
48883464 |
tggacacttgtgaaaccaggtgaaggtggtgttggtagaccaacttctggtcctgctattacaatggatggttcaatgggttataagtcgataacaaatt |
48883563 |
T |
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| Q |
123 |
atattagaagctttggtgacggagtagtttcatgttataatgatacttttgtggtgaattattttactgttgcatccactacttgggttaattttgatga |
222 |
Q |
| |
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| T |
48883564 |
acattagcggctctgatgatggagtagtttcatattataatgagacatttgtggtgaattatttcactgttgcat---ctacttggg-taattttgatga |
48883659 |
T |
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| Q |
223 |
tgtgaaagctattaaagtaaaagtatcttatgcaaagaaaaatggattacttggttac |
280 |
Q |
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|||| ||| |||||||| ||| || |||||||||||||||||||| |||||||||||| |
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| T |
48883660 |
tgtggaagttattaaagaaaaggtttcttatgcaaagaaaaatgg-ttacttggttac |
48883716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 67 - 333
Target Start/End: Original strand, 38816834 - 38817103
Alignment:
| Q |
67 |
ttctggtcctgctattacaaaggatggttcaatggcttataagttgataaaaagttatattagaagctttggtgacggagtagtttcatgttataatgat |
166 |
Q |
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| T |
38816834 |
ttctggtcctgcttttacaatggatggttcagtggcttataagtatatgaaaagttacattagaagctctggtgatggagtagtttcatgttataatgac |
38816933 |
T |
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| Q |
167 |
acttttgtggtgaattattttactgttgcatccactact---tgggttaattttgatgatgtgaaagctattaaagtaaaagtatcttatgcaaagaaaa |
263 |
Q |
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||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
38816934 |
gcttttgtggtgaattatttcactgttgcatccactagtacatgggttaattttgatgatgtggaagctattaaagaaaaagtttcttatgcaaagaaaa |
38817033 |
T |
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| Q |
264 |
atggattacttggttacaatgttttccaagttgggaatgatgacaattggatcctttcaaaggcaggtaa |
333 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
38817034 |
atggattacttggttacagtgtgttccaagttgggaatgatgacaattgggtcctttcaacggcaggtaa |
38817103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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