View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10916_low_23 (Length: 361)
Name: NF10916_low_23
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_23 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 33618165 - 33618506
Alignment:
| Q |
20 |
ctgcagctgtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618165 |
ctgcagctgtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaa |
33618264 |
T |
|
| Q |
120 |
aattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618265 |
aattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccata |
33618364 |
T |
|
| Q |
220 |
ttaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33618365 |
ttaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacc |
33618464 |
T |
|
| Q |
320 |
tctttcactctgtgggttttggacacgacggagctttacttt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618465 |
tctttcactctgtgggttttggacacgacggagctttacttt |
33618506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 357
Target Start/End: Original strand, 33608998 - 33609327
Alignment:
| Q |
28 |
gtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagag |
127 |
Q |
| |
|
||||||||||| |||||||||||||| | || ||||| ||| |||| || ||||||||||| | |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
33608998 |
gtgatgacaattggttccttcctcatatcggacacacccaacagcttagttgaacgtggtaaactcgagcaagctaaaaaagccttacgcaaaattagag |
33609097 |
T |
|
| Q |
128 |
gatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaag |
227 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||| | |||| |||| ||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
33609098 |
gatcctcagttgatattgaacctgagttagaagaacttattaagtcaatagaacttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaag |
33609197 |
T |
|
| Q |
228 |
ggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac |
327 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || || || |||||||| |||||||| || |
|
|
| T |
33609198 |
ggagtatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccat |
33609297 |
T |
|
| Q |
328 |
tctgtgggttttggacacgacggagcttta |
357 |
Q |
| |
|
|||||||| || |||| ||||| |||||| |
|
|
| T |
33609298 |
tctgtgggcttgggacgtgacggcgcttta |
33609327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 33627380 - 33627684
Alignment:
| Q |
20 |
ctgcagctgtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaa |
119 |
Q |
| |
|
|||||||||| || ||||| ||| |||||||||| || || ||||| ||| |||| || ||||||||||||||||||||||||||| |||| |||| ||| |
|
|
| T |
33627380 |
ctgcagctgtaattacaattggtgccttcctcataactgacacacccaacagcttagtcgaacgtggtaagatagagcaagccaaaaaagcattacacaa |
33627479 |
T |
|
| Q |
120 |
aattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccata |
219 |
Q |
| |
|
||| |||||||| || ||||||||||||| ||||||||||||||||| | || ||| ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
33627480 |
aatcagaggatcttccattgatattgaacctgagttagaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccata |
33627579 |
T |
|
| Q |
220 |
ttaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacc |
319 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||| | |||||||||||||| ||||| ||||||||||||||||| | || || |||||||| |||| |
|
|
| T |
33627580 |
ttcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacc |
33627679 |
T |
|
| Q |
320 |
tcttt |
324 |
Q |
| |
|
||||| |
|
|
| T |
33627680 |
tcttt |
33627684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 361
Target Start/End: Original strand, 33588282 - 33588615
Alignment:
| Q |
28 |
gtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagag |
127 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| ||||| | | ||||||| |||||||| |||||||| ||||||| |||| || | ||||| |||| |
|
|
| T |
33588282 |
gtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagag |
33588381 |
T |
|
| Q |
128 |
gatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaag |
227 |
Q |
| |
|
|||| || ||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| ||||||||| | || |
|
|
| T |
33588382 |
gatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatattagagag |
33588481 |
T |
|
| Q |
228 |
ggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac |
327 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
33588482 |
acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa |
33588581 |
T |
|
| Q |
328 |
tctgtgggttttggacacgacggagctttacttt |
361 |
Q |
| |
|
||||||||||| ||| || |||| |||||||||| |
|
|
| T |
33588582 |
tctgtgggtttaggaaacaacggtgctttacttt |
33588615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 361
Target Start/End: Original strand, 33595454 - 33595787
Alignment:
| Q |
28 |
gtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagag |
127 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| ||||| | | ||||||| |||||||| |||||||| ||||||| |||| || | ||||| |||| |
|
|
| T |
33595454 |
gtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagag |
33595553 |
T |
|
| Q |
128 |
gatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaag |
227 |
Q |
| |
|
|||| || ||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||| | || |
|
|
| T |
33595554 |
gatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagag |
33595653 |
T |
|
| Q |
228 |
ggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac |
327 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
33595654 |
acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa |
33595753 |
T |
|
| Q |
328 |
tctgtgggttttggacacgacggagctttacttt |
361 |
Q |
| |
|
||||||||||| ||| || |||| |||||||||| |
|
|
| T |
33595754 |
tctgtgggtttaggaaacaacggtgctttacttt |
33595787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 28 - 361
Target Start/End: Original strand, 33602585 - 33602918
Alignment:
| Q |
28 |
gtgatgacaatcggttccttcctcattaccgatacaccaaacggcttggtagaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagag |
127 |
Q |
| |
|
||||||||||| ||| |||||||||| |||| ||||| | | ||||||| |||||||| |||||||| ||||||| |||| || | ||||| |||| |
|
|
| T |
33602585 |
gtgatgacaattggtgccttcctcatatccgacacacccagcagcttggttgaacgtggcaagatagaccaagccaggaaagcattgcaaaaaatcagag |
33602684 |
T |
|
| Q |
128 |
gatcctcggttgatattgaacccgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaag |
227 |
Q |
| |
|
|||| || ||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||| |||||||| | || |
|
|
| T |
33602685 |
gatcatccattgatgttgagcccgagttagaagaactctttaagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagag |
33602784 |
T |
|
| Q |
228 |
ggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcac |
327 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| |
|
|
| T |
33602785 |
acaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaa |
33602884 |
T |
|
| Q |
328 |
tctgtgggttttggacacgacggagctttacttt |
361 |
Q |
| |
|
||||||||||| ||| || |||| |||||||||| |
|
|
| T |
33602885 |
tctgtgggtttaggaaacaacggtgctttacttt |
33602918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 79 - 324
Target Start/End: Original strand, 33622413 - 33622658
Alignment:
| Q |
79 |
gaacgtggtaagatagagcaagccaaacaagccttacgcaaaattagaggatcctcggttgatattgaacccgagttagaagaacttatcaagtggacag |
178 |
Q |
| |
|
||||||| |||||||||| ||| || |||||||||||| ||| | ||||||||| ||||||||||||| ||||| ||||||| ||| |||| ||| |
|
|
| T |
33622413 |
gaacgtgataagatagagagagctgaaaaagccttacgcataatcaaaggatcctccattgatattgaacctgagtttgaagaacatattaagtcaacac |
33622512 |
T |
|
| Q |
179 |
aaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaaca |
278 |
Q |
| |
|
|||||| |||||||| || |||| ||||||||||||||| ||||||| || |||| |||||| | | ||||| || |||||| ||| |||| |||| |
|
|
| T |
33622513 |
aaattgtaaaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggccttagcaatctcgtgtttcgaaca |
33622612 |
T |
|
| Q |
279 |
gcttacagggatcaacattgtagccttttattcacccaacctcttt |
324 |
Q |
| |
|
||||||||| ||||||||| || || |||||||| ||||||||| |
|
|
| T |
33622613 |
tgttacagggaacaacattgttgctttctattcacctaacctcttt |
33622658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 33562979 - 33563045
Alignment:
| Q |
230 |
aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacat |
296 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| || ||| |||| ||||| || || ||||||||||| |
|
|
| T |
33562979 |
aatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacat |
33563045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University