View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_24 (Length: 355)
Name: NF10916_low_24
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 33 - 338
Target Start/End: Complemental strand, 23445927 - 23445638
Alignment:
| Q |
33 |
gaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaagatttcagatactaccatgaacatgacaaat |
132 |
Q |
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| T |
23445927 |
gaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttatgaattcaaagttgtgcaacaaagatttcagatactaccatgaacatgacaaat |
23445828 |
T |
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| Q |
133 |
ctaattttatcacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatct |
232 |
Q |
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| T |
23445827 |
ctaattttattacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaactgtaataaaatct |
23445728 |
T |
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| Q |
233 |
aactaaacttaacaaatttgccattattcagcagaaaatttgtgttctgagtgctctagtgttggcaatttgatacaccaatctacgatccatccactac |
332 |
Q |
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| T |
23445727 |
aactaaacttaacaaatttgccattattcagcagaaaa----------------tctagtgttggcaatttgatacaccaatccacgatccatccactac |
23445644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 23446964 - 23446881
Alignment:
| Q |
26 |
gagagatgaaaaagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaagatttcaga |
110 |
Q |
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| T |
23446964 |
gagatatgagaaagcaatcgaagtagagtag-ttcaacaataaagacaatttatgaattcaaatttgtgcaacaaagattacaga |
23446881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 24298697 - 24298805
Alignment:
| Q |
139 |
ttatcacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatctaactaa |
238 |
Q |
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|||||||||||||| ||||||||||| |||||||||| |||||||||| ||| |||| ||||| |||| | | ||||||||| || | ||||||||| | |
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| T |
24298697 |
ttatcacaatagctcactagcacataaaggaccacatgttacaagagaaggactaactaattgataacaaagtcaacaaattg-aacataatctaactga |
24298795 |
T |
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| Q |
239 |
acttaacaaa |
248 |
Q |
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||| |||||| |
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| T |
24298796 |
actcaacaaa |
24298805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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