View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_25 (Length: 351)
Name: NF10916_low_25
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 688673 - 688334
Alignment:
| Q |
1 |
atctgttgtggtgtcacaaccatttttctaattgtagtattagtgatactattaatcttattcctcactgatttcaagcaaaaagaccccacaattacat |
100 |
Q |
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| T |
688673 |
atctgttgtggtgtcacaaccatttttctaattgtagtattagtgatactattaatcttattcctcactgatttcaagcaaaaggaccccacaattacat |
688574 |
T |
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| Q |
101 |
tacaatcagttaagtttggaaggtttcatcttgatattctcccaattttggatctaaatttatcattagctatattggtcacggttgataatcctaatca |
200 |
Q |
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| T |
688573 |
tacaatcagttaagtttggaaggtttcatcttgatattctcccaattttggatctaaatttatcattagctatattggtcacggttgataatcctaatca |
688474 |
T |
|
| Q |
201 |
tggaagctttacataccaaaacagcagtgcttatcttaattaccgtggtaatcttttggctacagctccattacatgaagacacaattccagctcttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
688473 |
tggaagctttacataccaaaacagcagtgcttatcttaattaccgtggtaatcttttggctacagctccattacatgaagacacaattccagctcttaaa |
688374 |
T |
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| Q |
301 |
tcacataacataagcacaattttgaatgtttatgttgatg |
340 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
688373 |
tcacataacataagcacaattttgaatgtttatgtagatg |
688334 |
T |
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