View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_3 (Length: 648)
Name: NF10916_low_3
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 394 - 629
Target Start/End: Original strand, 36645148 - 36645387
Alignment:
| Q |
394 |
gataataagaattacttactctttaatgctaaattcgaaaattcccaatttgtaaagtgactgttaagaagaaatacaaattttcaatgttaaaattcga |
493 |
Q |
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| T |
36645148 |
gataataagaattacttactctttaatgctaaattcgaaaattcccaatttgtacagtgactgtaaagaagaaatacaaattttgaatgttaatatttga |
36645247 |
T |
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| Q |
494 |
attttgaacaacaactatatctattttctttcaattggtg-----aaaaagaaacaatgcatttatcaacaagtgttacctctgcaatgaaatggtcagc |
588 |
Q |
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| T |
36645248 |
attttgaacaataattatatcta-tttctttcatttggtgaagaaaaaaaaaaacaatgcatttatcaacaagtgttacctctgcaatgaaatggtcggc |
36645346 |
T |
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| Q |
589 |
ggcatttttcgccactggtgaggtcatctgaccaacataag |
629 |
Q |
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| T |
36645347 |
ggcatttttcgccactggtgaggtcatctgaccaacataag |
36645387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 403 - 629
Target Start/End: Complemental strand, 1020646 - 1020420
Alignment:
| Q |
403 |
aattacttactctttaatgctaaattcgaaaattcccaatttgtaaagtgactgttaagaagaaatacaaattttcaatgttaaaattcgaattttgaac |
502 |
Q |
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| T |
1020646 |
aattacttaccctttaaggctaaattcgaaaattcccaatttgtacagtgactgtcaagaagaaatacaaattttcaaagttaatatttgaattttgaaa |
1020547 |
T |
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| Q |
503 |
aacaactatatctattttctttcaattggtgaaaaagaaacaatgcatttatcaacaagtgttacctctgcaatgaaatggtcagcggcatttttcgcca |
602 |
Q |
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| T |
1020546 |
aacaattatatctattttgtttcaatttgtgaaaaagaaacaatgcatttatcaacaagtgttacctctgcaatgaaatggtcagcagcatcttttgtta |
1020447 |
T |
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| Q |
603 |
ctggtgaggtcatctgaccaacataag |
629 |
Q |
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| T |
1020446 |
atggtgaggtcatctgaccaacataag |
1020420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 36644765 - 36645119
Alignment:
| Q |
18 |
acatcaagatggattctgattctgttcttattacacacctagaatttaattttgagaaatttcatctaatgtcttacaacaagaaaaagttgagatttgc |
117 |
Q |
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| T |
36644765 |
acatcaggatggattctgattctgttcttattacacacgtagaattt-----tgagaaatttcatctaaagtcttacaacaagaaaa-gttgggatttgc |
36644858 |
T |
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| Q |
118 |
ttagcctatagtcagcacatcagtaacttgttggatcaagatcgtatggt-caaatttcaagctcggtaaatttnnnnnnnnnnnnnnttgcattgaaat |
216 |
Q |
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| T |
36644859 |
atagccgacagccagcacatcagtaacttgttgaatcaagatcgtatgatccaaaattcaagctcagtaaattt-aaaaataaaaatattgcattgaaat |
36644957 |
T |
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| Q |
217 |
atgtaccatccgatcttagtccaacaaacaccgatgtactaattgcgtgaaacagtgagattgtgactgtaggcaatcaaaatccaaaaatctgagctac |
316 |
Q |
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| T |
36644958 |
atggatcgtccaatctcaatccaacaactacagatgtactgattgcgtgaatgcgtgagattgttactgtaggcaatccaaatccaaaaatttgagctac |
36645057 |
T |
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| Q |
317 |
aaggaagcagtaataaggtagcattcttctcaaccatatgcaaattaatgaatgataattacaaa |
381 |
Q |
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| T |
36645058 |
aagga---agtagtaaggtagcattcttattaaccatatgcaaattaatgaatgatcattacaaa |
36645119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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