View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_30 (Length: 324)
Name: NF10916_low_30
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 40821622 - 40821925
Alignment:
| Q |
1 |
agagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagat |
100 |
Q |
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| T |
40821622 |
agagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaataatgatttgagat |
40821721 |
T |
|
| Q |
101 |
ttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcactactt |
200 |
Q |
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| T |
40821722 |
ttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctctatcattttaagaacttaatgttgtttgagtcatttcactactt |
40821821 |
T |
|
| Q |
201 |
atttaggttatcannnnnnnnnnnnnnnnnnnnncctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcatttc |
300 |
Q |
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| T |
40821822 |
atttaggttatca-cttttcttttcttttttttccctagaccgtcatttttatttcatgaaatcaagtatgtatcctctcagatctacaagaatcatttc |
40821920 |
T |
|
| Q |
301 |
tttat |
305 |
Q |
| |
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||||| |
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| T |
40821921 |
tttat |
40821925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 20292187 - 20292021
Alignment:
| Q |
28 |
acccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagatttc---cttaaagtcaagagtctaaaa |
124 |
Q |
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| T |
20292187 |
acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgatttgagatttccttcttaacgtcaagagtctaaaa |
20292089 |
T |
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| Q |
125 |
aatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcact |
196 |
Q |
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| T |
20292088 |
aatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacatttcact |
20292021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
| Q |
9 |
tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt |
84 |
Q |
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|||||||||| ||||||||| ||||| ||||||| | | | | ||||||||| ||||||||||||||||||||| |
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| T |
20092587 |
tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt |
20092660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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