View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10916_low_32 (Length: 322)

Name: NF10916_low_32
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10916_low_32
NF10916_low_32
[»] chr7 (4 HSPs)
chr7 (13-309)||(25516869-25517166)
chr7 (13-310)||(25524931-25525223)
chr7 (186-310)||(25540466-25540590)
chr7 (82-214)||(25537546-25537678)
[»] chr2 (1 HSPs)
chr2 (13-254)||(44461014-44461249)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 25516869 - 25517166
Alignment:
Q  13 agaaataagaggggttttctcaagaattctggggctt-gttacatagtcactcatt-gtaatgtgtcacattcttgatatgaacaagtatcaaagggatg 110  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  25516869 agaaataagaggggttttctcaagaattttgcggctttgttacatagtcacacatttgtaatgtgtcacattcttgatatgaacaagtatcaaagggatg 25516968  T
Q  111 ttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25516969 ttctgtcccttttcttcttatggctgagtgtgttgccaaagagctaaaggaaactaagttaaggacccatgaaactagaagtcctttggctttgaggatt 25517068  T
Q  211 cgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggttgctgat 309  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  25517069 cgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcctcagtgaaattggctgctgat 25517166  T

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Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 25525223 - 25524931
Alignment:
Q  13 agaaataagaggggttttctcaagaattctggggcttgttacatagtcactcattgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgtt 112  Q
    ||||||||||||| |||||| ||||||||||||||| ||||| | ||||| |||  |||||||||||||||||||||||||||  |||  |||||||||     
T  25525223 agaaataagagggtttttcttaagaattctggggctagttacttggtcacacatcataatgtgtcacattcttgatatgaacacatattcaagggatgtc 25525124  T
Q  113 ctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagtt-aaggacccatgaaactagtagtcctttggctttgaggattc 211  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| ||   || | ||| ||||||||||||||||||||| ||||     
T  25525123 ctgtcccttttcttcatatgactgagtgtgttgccaaagagctaaaggaaactaagttaaatctccaacgaagctagtagtcctttggctttgacgattt 25525024  T
Q  212 gagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacattcctcagtgaaattggttgctgatg 310  Q
    ||||||||||||||||||||||||||||||| |||||||       | |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  25525023 gagtgctcgcaacaaatgcaactctaggagccgtttttt------tttaatatgatagatggaacaggtaacattcctcagtgaaattggttgatgatg 25524931  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 25540590 - 25540466
Alignment:
Q  186 tagtagtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttttttataatggtaaatatgatagatggaataggtaacat 285  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| | ||||| |    
T  25540590 tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt 25540491  T
Q  286 tcctcagtgaaattggttgctgatg 310  Q
    |||||||||||||||||| ||||||    
T  25540490 tcctcagtgaaattggttactgatg 25540466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 25537678 - 25537546
Alignment:
Q  82 tcttgatatgaacaagtatcaaagggatgttctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatg 181  Q
    |||| ||||||||||||||  |||||||||||||||||||| |||| ||||  ||||||||||||||||||| |||| |||| |||||||| | ||| ||    
T  25537678 tctttatatgaacaagtattcaagggatgttctgtccctttccttcatatgaatgagtgtgttgccaaagagataaatgaaattaagttaaagccccttg 25537579  T
Q  182 aaactagtagtcctttggctttgaggattcgag 214  Q
    ||  |  ||||||||| ||||||||||||||||    
T  25537578 aagttgctagtccttttgctttgaggattcgag 25537546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 44461249 - 44461014
Alignment:
Q  13 agaaataagaggggttttctcaagaattctggggcttgttacatagtcactcattgtaatgtgtcacattcttgatatgaacaagtatcaaagggatgtt 112  Q
    ||||||||||||| ||||||| ||||||| |||||  |||  ||||| |  | ||||||||| ||||||||||| |||||||||||||| |  || ||||    
T  44461249 agaaataagagggtttttctcgagaattccggggcgcgttgtatagttatgccttgtaatgtttcacattcttggtatgaacaagtatccataggttgtt 44461150  T
Q  113 ctgtcccttttcttcttatggctgagtgtgttgccaaagaggtaaaggaaactaagttaaggacccatgaaactagtagtcctttggctttgaggattcg 212  Q
    |||| |||||||||| |||||||||||||||||| || ||| | |||||| ||||||||| | | | |||| || |||||||      |||||||||| |    
T  44461149 ctgttccttttcttcatatggctgagtgtgttgcaaaggagcttaaggaagctaagttaaagccacttgaagctggtagtcc------tttgaggattgg 44461056  T
Q  213 agtgctcgcaacaaatgcaactctaggagctgttttttataa 254  Q
    |||||| ||||||||||||||||||| ||||| |||||||||    
T  44461055 agtgcttgcaacaaatgcaactctagcagctggtttttataa 44461014  T

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