View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_33 (Length: 320)
Name: NF10916_low_33
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 18697738 - 18697461
Alignment:
| Q |
1 |
agtgcaacaaattactgaaggggcagaagagatgtggctcacagctgcgcatgagccgaggaggaatcaaaggatctgtagggaaaaataatggaaagag |
100 |
Q |
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| T |
18697738 |
agtgcaacaaattactgaaggggcagaagagatgcggcttacagctgcgcttgagcagaggaggaatcaaaggatctgtagggaaa--taacggaaagag |
18697641 |
T |
|
| Q |
101 |
actacgaagaaactcagattttacttcaggaagcaaagaagctttttaagagacaaatggagaagatactgaaaaaattaattaaaaccattgatttttt |
200 |
Q |
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| T |
18697640 |
actacaaacaaactcaggtttcacttcaggaagcaaagaagccttttaagagacaaatggagaagatactgaaaaaattaattaaaaccattgatttttt |
18697541 |
T |
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| Q |
201 |
ggaaagagcaaagagaggaaagtctgcaccgcttatcggcgcagcatatcaacgacacctaatggaagagaggattcttc |
280 |
Q |
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| T |
18697540 |
ggaaagagcaaagagaggaaagtctgctccgcttatcgaagcagcatatcaacaatgcctaatggaagagaggattcttc |
18697461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 33946161 - 33946036
Alignment:
| Q |
155 |
aaatggagaagatactgaaaaaattaattaaaaccattgattttttggaaagagcaaagagaggaaagtctgcaccgcttatcggcgcagcatatcaacg |
254 |
Q |
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| T |
33946161 |
aaatggagaagaaactgaaaaaattaagtaaaaccatggattttttggaaagagctaagagagaagagtctgctccgctaatcgaagcggcatatcaaca |
33946062 |
T |
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| Q |
255 |
acacctaatggaagagaggattcttc |
280 |
Q |
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| T |
33946061 |
acgcctagtggaagagaggattcttc |
33946036 |
T |
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