View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_36 (Length: 267)
Name: NF10916_low_36
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28491946 - 28492201
Alignment:
| Q |
1 |
ccagctttgttcgaggatttttctctttacccgtaagaactgaaatggggcctaagaaggcaagatttggcggagtagtagtgttgnnnnnnncacattt |
100 |
Q |
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| T |
28491946 |
ccagctttgttcgaggatctttctctttacccgtaagaactgaaatggggcctaagaaggcaagatttggcggagtagtaatgttgaaaaaaacacattt |
28492045 |
T |
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| Q |
101 |
tataccaaattttgttgccacaggacccagccaaaaaggagcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaaaggttgt |
200 |
Q |
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| T |
28492046 |
tataccaatttttgttgccacaggacccaaccaaaaaggagcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaaaggttgt |
28492145 |
T |
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| Q |
201 |
tccagcttgtcaaatgcatctttaaggtagtgaaatacatcccatgaaacatctgt |
256 |
Q |
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| T |
28492146 |
tccagcttgtcaaatgcatctttaaggtattgaaatacatcccatgagacatctgt |
28492201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 28495358 - 28495492
Alignment:
| Q |
94 |
cacattttataccaaattttgttgccacaggacccagccaaaaaggagcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaa |
193 |
Q |
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| T |
28495358 |
cacattttatacctaattggggtgccacagaacccaaccaaaaaggaacaaaatcatgcaaaatccaatcagcattagaagattgaaggaaatgagttaa |
28495457 |
T |
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| Q |
194 |
aggttgttccagcttgtcaaatgcatctttaaggt |
228 |
Q |
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| T |
28495458 |
aggttgttcaagtttgtcaaaggcatttttcaggt |
28495492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 28507947 - 28508036
Alignment:
| Q |
140 |
agcaaaatcatgcaagatccaatcagcatcagaagattcaagaaaattggtcaaaggttgttccagcttgtcaaatgcatctttaaggta |
229 |
Q |
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| T |
28507947 |
agcaaaatcatgaaaaatccaaccagcattagaagtttcaaggaaatgggtgaaaggtttttcaagtttgtcaaaggcatttttaaggta |
28508036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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