View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_38 (Length: 250)
Name: NF10916_low_38
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_38 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2187293 - 2187535
Alignment:
| Q |
1 |
tttcacattgtaataatctcaagagttttccagaaatattaggagatatgaaacatataacatacattgaattggttggtacttccatagaacaatttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187293 |
tttcacattgtaataatctcaagagttttccagaaatattaggagatatgaaacatataacatacattgaattggttggtacttccatagaacaatttcc |
2187392 |
T |
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| Q |
101 |
attttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatgctcgtgaaaatgatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187393 |
attttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatgctcgtgaaaatgatata |
2187492 |
T |
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| Q |
201 |
ccgagctccacggtgtattcaaatgttcaatttcttcatctca |
243 |
Q |
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| T |
2187493 |
ccgagctccacggtgtattcaaatgttcaatttcttcatctca |
2187535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2171324 - 2171082
Alignment:
| Q |
1 |
tttcacattgtaataatctcaagagttttccagaaatattaggagatatgaaacatataacatacattgaattggttggtacttccatagaacaatttcc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
2171324 |
tttcatattgtaataatctcaagagttttccagaaatatttggagatatgaaagatataacatacattgaattggttggcacctccatagaacaatttcc |
2171225 |
T |
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| Q |
101 |
attttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatgctcgtgaaaatgatata |
200 |
Q |
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| T |
2171224 |
atgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagtggaatgcctcataaattgtcctggattaatgctcatgagaatgataaa |
2171125 |
T |
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| Q |
201 |
ccgagctccacggtgtattcaaatgttcaatttcttcatctca |
243 |
Q |
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| T |
2171124 |
ccaagctccatggtgtcttcaaatgttcaatttcttcatctca |
2171082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 27425272 - 27425235
Alignment:
| Q |
81 |
acttccatagaacaatttccattttcctttcaaaatct |
118 |
Q |
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| T |
27425272 |
acttccataggagaatttccattttcctttcaaaatct |
27425235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 11937 - 12179
Alignment:
| Q |
1 |
tttcacattgtaataatctcaagagttttccagaaatattaggagatatgaaacatataacatacattgaattggttggtacttccatagaacaatttcc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
11937 |
tttcatattgtaataatctcaagagttttccagaaatatttggagatatgaaagatataacatacattgaattggttggcacctccatagaacaatttcc |
12036 |
T |
|
| Q |
101 |
attttcctttcaaaatctctccatggtccatactttacaaatatttggaagtggaaagcctcataatttgtcttggattaatgctcgtgaaaatgatata |
200 |
Q |
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|| ||| |||| ||||||| | |||||||||| ||| |||| || ||||||||| ||||||||| ||||| ||||||||||||| ||| ||||||| | |
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| T |
12037 |
atgttcatttctaaatctcgtgagggtccatactctacgaatagtttgaagtggaatgcctcataaattgtcctggattaatgctcatgagaatgataaa |
12136 |
T |
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| Q |
201 |
ccgagctccacggtgtattcaaatgttcaatttcttcatctca |
243 |
Q |
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|| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
12137 |
ccaagctccatggtgtcttcaaatgttcaatttcttcatctca |
12179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 210203 - 210153
Alignment:
| Q |
1 |
tttcacattgtaataatctcaagagttttccagaaatattaggagatatga |
51 |
Q |
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||||| ||||| ||| |||||||||||||||||||||||| ||||| |||| |
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| T |
210203 |
tttcatattgttatagtctcaagagttttccagaaatattgggagagatga |
210153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 62091 - 62128
Alignment:
| Q |
81 |
acttccatagaacaatttccattttcctttcaaaatct |
118 |
Q |
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| T |
62091 |
acttccataggagaatttccattttcctttcaaaatct |
62128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 18076283 - 18076320
Alignment:
| Q |
81 |
acttccatagaacaatttccattttcctttcaaaatct |
118 |
Q |
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|||||||||| | ||||||||||||||||||||||||| |
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| T |
18076283 |
acttccataggagaatttccattttcctttcaaaatct |
18076320 |
T |
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