View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_40 (Length: 243)
Name: NF10916_low_40
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 8800598 - 8800812
Alignment:
| Q |
10 |
agagagaagaaagagtattgtatcatagtcttcaattgtgtatgattatattataaatgagatctatttatnnnnnnnnnn---tacaaaaatataatat |
106 |
Q |
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| T |
8800598 |
agagagaagaaagagtattgtatcatagtcttcaattatgtatgattatgttataaatgagatctatttataaaaaaaaaaaaatacaaaaatataatat |
8800697 |
T |
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| Q |
107 |
ggatcaatagtatggcctaataattaatggacatgcacttttcttcaaaataataataataatggacagtacatgcacttacatattcaaaacaaaaact |
206 |
Q |
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|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8800698 |
ggatcaatagtatgaccttataactaatggacatgcacttttcttcaaaataataataataatggacagcacatgcacttacatattcaaaacaaaaact |
8800797 |
T |
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| Q |
207 |
actatattcaagctg |
221 |
Q |
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| T |
8800798 |
attatattcaagctg |
8800812 |
T |
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