View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10916_low_41 (Length: 241)

Name: NF10916_low_41
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10916_low_41
NF10916_low_41
[»] chr7 (5 HSPs)
chr7 (9-223)||(34293911-34294124)
chr7 (1-123)||(10365418-10365542)
chr7 (1-123)||(32978745-32978867)
chr7 (1-123)||(31038620-31038745)
chr7 (1-116)||(21591032-21591148)
[»] chr1 (11 HSPs)
chr1 (1-123)||(8038864-8038988)
chr1 (1-123)||(4654165-4654289)
chr1 (1-123)||(27787236-27787360)
chr1 (1-123)||(47896349-47896474)
chr1 (3-123)||(15495508-15495631)
chr1 (1-123)||(10494319-10494444)
chr1 (37-123)||(26842701-26842787)
chr1 (34-123)||(40581081-40581171)
chr1 (1-123)||(14351727-14351853)
chr1 (1-123)||(25537235-25537361)
chr1 (74-123)||(29099063-29099114)
[»] chr6 (5 HSPs)
chr6 (1-123)||(11366388-11366510)
chr6 (3-123)||(31026767-31026892)
chr6 (7-123)||(78406-78525)
chr6 (9-123)||(9566470-9566579)
chr6 (1-123)||(10670494-10670618)
[»] chr2 (6 HSPs)
chr2 (1-116)||(27888306-27888423)
chr2 (3-123)||(6705141-6705263)
chr2 (1-123)||(1532826-1532949)
chr2 (1-123)||(6186808-6186933)
chr2 (1-42)||(14951384-14951426)
chr2 (1-92)||(9910131-9910223)
[»] chr8 (5 HSPs)
chr8 (1-123)||(38498866-38498988)
chr8 (1-123)||(10181587-10181710)
chr8 (1-123)||(15050533-15050658)
chr8 (1-123)||(5514803-5514928)
chr8 (68-123)||(39582155-39582211)
[»] chr5 (7 HSPs)
chr5 (1-123)||(26331914-26332039)
chr5 (3-123)||(40680507-40680629)
chr5 (1-92)||(26331572-26331664)
chr5 (1-121)||(24867564-24867687)
chr5 (94-123)||(11470348-11470377)
chr5 (29-123)||(42220945-42221041)
chr5 (1-121)||(42269307-42269430)
[»] chr4 (5 HSPs)
chr4 (1-123)||(42678095-42678218)
chr4 (1-123)||(14440735-14440860)
chr4 (1-123)||(12130141-12130266)
chr4 (1-116)||(45872656-45872774)
chr4 (1-123)||(56092799-56092924)
[»] chr3 (4 HSPs)
chr3 (1-123)||(46743382-46743507)
chr3 (6-123)||(3460939-3461059)
chr3 (68-123)||(52991862-52991919)
chr3 (90-123)||(52700601-52700634)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-123)||(2665-2790)
[»] scaffold0974 (1 HSPs)
scaffold0974 (1-123)||(2905-3030)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-123)||(269590-269662)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 34293911 - 34294124
Alignment:
9 ttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgttttaaataaatt 108  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
34293911 ttccgcatatatacggacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctgtgttttaaataaatt 34294010  T
109 tcattttagcttcttnnnnnnnnnncatctaaccacataatttgatataccatttatatataggtatgcatatttaaacaattaaatcatatttttatgg 208  Q
    |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34294011 tcattttagcttctt-aaaaaaaaacatctaaccacataatttgatataccatttatatataggtatgcatatttaaacaattaaatcatatttttatgg 34294109  T
209 aaaaatagtttaaat 223  Q
    |||||||||||||||    
34294110 aaaaatagtttaaat 34294124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10365542 - 10365418
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    ||||| |||| | ||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||| |||||||||||||||||||  | |||||    
10365542 tttggctgttgcacatatatacagtcacttttcccttctatggtgctctttaagtcttctagcttagcattctttgtgcttgctaggattctttgtgttt 10365443  T
99 taaataaatttcattttagcttctt 123  Q
    |||||||||||||||||||||||||    
10365442 taaataaatttcattttagcttctt 10365418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32978867 - 32978745
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttta 100  Q
    ||||| || |||||||||| ||||||||||||| ||| |||| | |||||| |||||  |||||||| |||  || |||||||||||||||| |||||||    
32978867 tttggatgatccgcatataaacagacacttttcttttatatgttactctttaagtctcatagcttaatattccttatgcttgctaggattctgtgtttta 32978768  T
101 aataaatttcattttagcttctt 123  Q
    | |||||||||||||| ||||||    
32978767 attaaatttcattttaacttctt 32978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 31038745 - 31038620
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt 97  Q
    |||| ||||||||  ||||||| | |||||||||||||||||| |||| ||| ||| |  |||| || ||||  ||||||| | || |||||| |  |||    
31038745 tttgagtgttccgtgtatatacgacacacttttcctttgtatgttgctatttaagtatcttagcctagcattccttgtgctagataagattctttacgtt 31038646  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||    
31038645 ttaaataaatttcattttagcttctt 31038620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 21591032 - 21591148
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t 97  Q
    ||||||||||| |||||||||| | |||||||||  ||||||| |  | ||| ||||| ||| |||| ||||  ||||||||||||| ||||| |||  |    
21591032 tttgggtgttctgcatatatacgacacacttttctcttgtatgtt--tttttaagtctcctaacttagcattccttgtgcttgctagaattctttgtgtt 21591129  T
98 ttaaataaatttcatttta 116  Q
    |||||||||||||||||||    
21591130 ttaaataaatttcatttta 21591148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8038988 - 8038864
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctagga--ttctatgttt 98  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||| ||||  |||||||||||||||  || | |||||    
8038988 tttgggtgttccgcatatatacatacacttttcctttatatggtgttctttaagtcttctagcttagcattccttgtgcttgctaggattttttgtgttt 8038889  T
99 taaataaatttcattttagcttctt 123  Q
    |||||||||||||||||||||||||    
8038888 taaataaatttcattttagcttctt 8038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4654165 - 4654289
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    |||| ||||||| |||||||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||   |||||||||||||||||  | |||||    
4654165 tttgagtgttccacatatatagagacactttccctttgtatgttgctctttaagtcttctagcttagcattccctgtgcttgctaggattctttgtgttt 4654264  T
99 taaataaatttcattttagcttctt 123  Q
    ||||||| |||||||||||||||||    
4654265 taaataattttcattttagcttctt 4654289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27787236 - 27787360
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tt 98  Q
    |||||||||||||||||||||  |||||||||| |||||||| || ||||| ||||| |||||||| ||||  |||||||||||| |||||| |||  ||    
27787236 tttgggtgttccgcatatatatggacacttttcgtttgtatgttgttctttaagtctcctagcttagcattccttgtgcttgctaagattctttgtgctt 27787335  T
99 taaataaatttcattttagcttctt 123  Q
    |||||||||||||||||||||||||    
27787336 taaataaatttcattttagcttctt 27787360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 47896474 - 47896349
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctc-tttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt 97  Q
    ||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||| |||||||||  || |||||||||||||||| ||  ||    
47896474 tttggatgttccgcatatatacggacactttttctttgtatgttgctcttttaagtcttctaacttaacattccttatgcttgctaggattctttgtatt 47896375  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||| ||||||    
47896374 ttaaataaatttcattttaacttctt 47896349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 15495631 - 15495508
Alignment:
3 tgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct--atgtttt 99  Q
    |||||||||||||||||||  | |||||||||||||||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| ||||||   ||||||    
15495631 tgggtgttccgcatatataaggcacacttttcctttgtatgttgctttttaagtctcctagcctagcatttcttgtgcatgctatgattcttagtgtttt 15495532  T
100 aaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||    
15495531 aaataaatttcattttagcttctt 15495508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10494444 - 10494319
Alignment:
1 tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt 97  Q
    ||||||||||| |||||||||||  |||||||||||||||||| |||| ||| ||||| |||||   |||||  ||||||||||||||||||| |  |||    
10494444 tttgggtgttctgcatatatacaacacacttttcctttgtatgttgctatttaagtctcctagccagacattccttgtgcttgctaggattctttgcgtt 10494345  T
98 ttaaataaatttcattttagcttctt 123  Q
    || |||||||||||||||||||||||    
10494344 ttgaataaatttcattttagcttctt 10494319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26842787 - 26842701
Alignment:
37 tgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgttttaaataaatttcattttagcttctt 123  Q
    |||||| |||| ||| ||||| ||| | || ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||    
26842787 tgtatgttgctttttaagtctcctaacctagcattccttgtgcttgctaggattctgtgttttaaataaatttcattttagcttctt 26842701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 40581081 - 40581171
Alignment:
34 ctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt 123  Q
    ||||||||| |||| ||| |||||||||||||| ||||  |||||||||||| |||||| |||  |||||||||||||||||||||||||||    
40581081 ctttgtatgttgct-tttaagtcttctagcttagcattccttgtgcttgctaagattctttgtgttttaaataaatttcattttagcttctt 40581171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 14351727 - 14351853
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgct-ctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--t 96  Q
    |||||||||||||||||||||| | |||||||||||||||||| |||| |||| ||  | ||||  || ||||  ||||||| ||||||||||| ||  |    
14351727 tttgggtgttccgcatatatacgacacacttttcctttgtatgttgctactttaagattcctagtctagcattccttgtgctcgctaggattctttgcat 14351826  T
97 tttaaataaatttcattttagcttctt 123  Q
    ||| |||||||||||||||||||||||    
14351827 tttgaataaatttcattttagcttctt 14351853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25537361 - 25537235
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttca-gtcttctagcttaacattttttgtgcttgctaggattctatg--t 96  Q
    |||| ||||||||||||||||| | ||||||||||| |||||| || | ||| | |||| ||||| || |||| |||||||||||||||||||| ||  |    
25537361 tttgtgtgttccgcatatatacgacacacttttcctgtgtatgttgtttttttaagtctcctagcctagcattctttgtgcttgctaggattctttgcat 25537262  T
97 tttaaataaatttcattttagcttctt 123  Q
     |||||||||| |||||||||||||||    
25537261 gttaaataaatatcattttagcttctt 25537235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 29099114 - 29099063
Alignment:
74 ttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||| |||  |||||||||||||||||||| ||||||    
29099114 ttgtgcttgctaggattctttgtgttttaaataaatttcattttaacttctt 29099063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11366510 - 11366388
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttta 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||| ||| ||||  || |||||||||  ||||| |||||||    
11366510 tttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaagtcttttaggttagcattccttatgcttgctaaaattctgtgtttta 11366411  T
101 aataaatttcattttagcttctt 123  Q
    |||||||||||||||| ||||||    
11366410 aataaatttcattttaacttctt 11366388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 31026767 - 31026892
Alignment:
3 tgggtgttccgcatatatacag-acacttttcctttgta--tggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct--atgtt 97  Q
    ||||||||| |||||||||| | ||||||||||||||||  || |||| ||| ||||||||||| |||||||| || ||||||||||||||||   ||||    
31026767 tgggtgttctgcatatatacggcacacttttcctttgtaaatgttgctttttaagtcttctagcctaacatttcttatgcttgctaggattcttagtgtt 31026866  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||| ||||||    
31026867 ttaaataaatttcattttaacttctt 31026892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 78525 - 78406
Alignment:
7 tgttccgcatatatacaga-cacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gttttaaat 103  Q
    |||||||||||||||| |  ||||||||||||||||| | || ||| ||||| |||||  | ||||| ||||||||||||||||||| |  ||||| |||    
78525 tgttccgcatatatacggctcacttttcctttgtatgttcctatttaagtctcctagccaagcatttcttgtgcttgctaggattctttgcgttttgaat 78426  T
104 aaatttcattttagcttctt 123  Q
    ||| ||||||||||||||||    
78425 aaacttcattttagcttctt 78406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 9566579 - 9566470
Alignment:
9 ttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tttaaataaa 106  Q
    |||||||||||||| ||||||||||||||| |||||||| ||| |||  ||||      ||||  ||||||||||||||||||| |||  ||||||||||    
9566579 ttccgcatatatacggacacttttcctttgcatggtgct-tttaagttctcta------cattccttgtgcttgctaggattctttgtgttttaaataaa 9566487  T
107 tttcattttagcttctt 123  Q
    |||||||||| ||||||    
9566486 tttcattttaacttctt 9566470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10670494 - 10670618
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttt 99  Q
    ||||| ||||| |||||||||| | | |||||||||||||||| || | ||| ||||| ||| |||| ||||  ||||||||  ||| |||||  |||||    
10670494 tttggatgttctgcatatatacgacaaacttttcctttgtatgttgttttttaagtctcctaacttagcattacttgtgcttattagaattctgggtttt 10670593  T
100 aaataaattt-cattttagcttctt 123  Q
    |||||||||| ||||||| ||||||    
10670594 aaataaatttccattttaacttctt 10670618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27888423 - 27888306
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||| |||| ||| ||||  ||||||||||||||||||  |||||||    
27888423 tttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaattctcctagtttagcattcgttgtgcttgctaggattctttatgttt 27888324  T
99 taaataaatttcatttta 116  Q
    ||||||||||||||||||    
27888323 taaataaatttcatttta 27888306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 6705263 - 6705141
Alignment:
3 tgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta-tgtttta 100  Q
    |||||||||||||||||||| | |||||||||||||||||| || | ||| ||||| ||||| || ||||  || |||||||| ||||  || |||||||    
6705263 tgggtgttccgcatatatacgacacacttttcctttgtatgttgttttttaagtctcctagcctagcattccttatgcttgctgggatcttagtgtttta 6705164  T
101 aataaatttcattttagcttctt 123  Q
    |||||||||||||||||||||||    
6705163 aataaatttcattttagcttctt 6705141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1532949 - 1532826
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    ||||| ||||||||||||||| ||||||||||| |||||||| |||||||| | ||| ||| ||| | |||  |||| |||  ||||||||  | |||||    
1532949 tttggatgttccgcatatatatagacacttttcgtttgtatgttgctctttaaatctcctaactt-agattccttgtacttattaggattctttgtgttt 1532851  T
99 taaataaatttcattttagcttctt 123  Q
     ||||||||||||||||| ||||||    
1532850 gaaataaatttcattttaccttctt 1532826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6186808 - 6186933
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgct-ctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt 97  Q
    |||||||| |||||||||||| | ||||||||| |||||||| | || |||| ||  | ||||  || ||||  ||||||| ||||||||||| ||  ||    
6186808 tttgggtgctccgcatatatatacacacttttcatttgtatgtttctactttaagattcctagtctagcattgcttgtgctcgctaggattctttgcatt 6186907  T
98 ttaaataaatttcattttagcttctt 123  Q
    || |||||||||||||||||||||||    
6186908 ttgaataaatttcattttagcttctt 6186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14951384 - 14951426
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatg 42  Q
    |||||||||||||||||||||| | ||||||||||||||||||    
14951384 tttgggtgttccgcatatatacgacacacttttcctttgtatg 14951426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9910223 - 9910131
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct 92  Q
    ||||| |||||||||||||||| | |||||||||||||||||| | ||  || |||||  ||||  ||||||  |||||||||||| ||||||    
9910223 tttggatgttccgcatatatacgacacacttttcctttgtatgttcctacttaagtctcatagccaaacattccttgtgcttgctacgattct 9910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38498988 - 38498866
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    ||||||||||||||||||   | ||||||||||||||||||| |||||||| |||||| | ||||||||||   |||||||||||||||||  | |||||    
38498988 tttgggtgttccgcatatg--cggacacttttcctttgtatgttgctctttaagtcttatggcttaacattccctgtgcttgctaggattctttgtgttt 38498891  T
99 taaataaatttcattttagcttctt 123  Q
    |||||||||||||||||| ||||||    
38498890 taaataaatttcattttaacttctt 38498866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10181710 - 10181587
Alignment:
1 tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt 98  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||| ||| |||||  ||||||||||||| || | |||| ||||||||  | |||||    
10181710 tttggatgttccgcatatatacagacacttctcctttgtatgttgct-tttaagtctcttagcttaacatttcttatacttgttaggattctttgtgttt 10181612  T
99 taaataaatttcattttagcttctt 123  Q
    | |||||||||||||||||||||||    
10181611 tcaataaatttcattttagcttctt 10181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 15050533 - 15050658
Alignment:
1 tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt 97  Q
    |||| ||||||||||||||||| | ||||||||||| |||||| || | ||| | ||| ||||| || ||||  ||||||||||||| ||||| ||  |     
15050533 tttgtgtgttccgcatatatacggcacacttttcctgtgtatgttgttttttaattctcctagcctagcattccttgtgcttgctagaattctttgcatg 15050632  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||    
15050633 ttaaataaatttcattttagcttctt 15050658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5514928 - 5514803
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt 97  Q
    |||||||||||||||||||||| | ||||| || ||||||||| | ||  || ||||| |||| | | |||| ||||||||||||  |||||| |  |||    
5514928 tttgggtgttccgcatatatacgacacactctttctttgtatgttcctacttaagtctcctagttaagcattctttgtgcttgcttagattctttgcgtt 5514829  T
98 ttaaataaatttcattttagcttctt 123  Q
    || |||||| ||||||||| ||||||    
5514828 ttgaataaacttcattttaccttctt 5514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 39582155 - 39582211
Alignment:
68 cattttttgtgcttgctaggattctatgtttt-aaataaatttcattttagcttctt 123  Q
    |||| |||||||||| ||||||| | |||||| |||||||||| |||||||||||||    
39582155 cattctttgtgcttgttaggattgtgtgtttttaaataaattttattttagcttctt 39582211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26331914 - 26332039
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt 97  Q
    ||||| |||||||||||||||| | |||||||||||||||||| |||| ||| | ||| ||||| || ||||  ||||||||||||||||||||  ||||    
26331914 tttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattctatttgtt 26332013  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||| ||||||    
26332014 ttaaataaatttcattttaacttctt 26332039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 40680629 - 40680507
Alignment:
3 tgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta-tgtttta 100  Q
    |||||||||||||||||||| | |||||||||||||||||| |||| ||| |||||  || | || ||||  ||||||||||||| ||  || |||||||    
40680629 tgggtgttccgcatatatacggcacacttttcctttgtatgttgctttttaagtctcttaacctagcattccttgtgcttgctagaatcttagtgtttta 40680530  T
101 aataaatttcattttagcttctt 123  Q
    |||||||||||||||| ||||||    
40680529 aataaatttcattttaccttctt 40680507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26331572 - 26331664
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct 92  Q
    ||||| |||||||||||||||| | |||||||||||||||||| |||| ||| | ||| ||||| || ||||  |||||||||||||||||||    
26331572 tttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattct 26331664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 24867564 - 24867687
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t 97  Q
    ||||| ||||||||||||| || | ||| |||| ||||||| | |||| ||| ||||||||| | || ||||  ||||||||||||| ||||| |||  |    
24867564 tttggatgttccgcatatacacgacacattttttctttgtacgctgctttttaagtcttctaacctatcattccttgtgcttgctagtattctttgtgtt 24867663  T
98 ttaaataaatttcattttagcttc 121  Q
    ||||||||||||||||||| ||||    
24867664 ttaaataaatttcattttaacttc 24867687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 11470377 - 11470348
Alignment:
94 tgttttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||||||    
11470377 tgttttaaataaatttcattttagcttctt 11470348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 42221041 - 42220945
Alignment:
29 ttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--ttttaaataaatttcattttagcttctt 123  Q
    |||||||||||||| |||| ||| ||||| ||||| || | ||  | ||||| ||||||||||| ||  |||| ||| |||||||||||||||||||    
42221041 ttttcctttgtatgttgctatttaagtctcctagcctagccttcctcgtgctagctaggattctttgcgttttgaattaatttcattttagcttctt 42220945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42269307 - 42269430
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt 97  Q
    |||| ||||||||||||||||| | |||||||| || |||||| | ||  || ||||| |||||| | ||||  || ||||||||| |||||| |  |||    
42269307 tttgagtgttccgcatatatacaacacactttttctctgtatgttcctacttaagtctcctagctaagcattccttatgcttgctaagattctttgcgtt 42269406  T
98 ttaaataaatttcattttagcttc 121  Q
    || |||||| ||||||||||||||    
42269407 ttgaataaacttcattttagcttc 42269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42678095 - 42678218
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttt 99  Q
    |||||||||||| ||||||||| ||||||||||||||| |||| | || ||| ||||| ||||| || ||||| | ||||||||||||||||| ||||||    
42678095 tttgggtgttccacatatatacgagacacttttcctttttatgttactttttaagtctcctagcctagcatttctcgtgcttgctaggattctctgtttt 42678194  T
100 aaataaatttcattttagcttctt 123  Q
    ||| ||||| ||||||| ||||||    
42678195 aaacaaattccattttaacttctt 42678218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14440860 - 14440735
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt 97  Q
    |||||||||||||||||||||| | | |||||||||| ||||  || | ||| ||||| ||||  |||||||| ||||||||| |||||||||   ||||    
14440860 tttgggtgttccgcatatatacgacaaacttttccttagtatattgttttttaagtctcctagtctaacatttcttgtgcttgttaggattcttagtgtt 14440761  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||    
14440760 ttaaataaatttcattttagcttctt 14440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12130266 - 12130141
Alignment:
1 tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt 97  Q
    |||||||||||||||||||||||  ||||||||| | |||||| |||| ||| ||||| ||||| || ||||  || ||| ||||||||||||   ||||    
12130266 tttgggtgttccgcatatatacatcacacttttcttctgtatgatgctttttaagtctcctagcctagcattccttctgcatgctaggattcttagtgtt 12130167  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||| ||||||||||||||||||    
12130166 ttaaatagatttcattttagcttctt 12130141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45872774 - 45872656
Alignment:
1 tttgggtgttccgcatatatacaga-cacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t 97  Q
    |||||||||||||||||||||| || ||||||| ||||||||| || | ||| |||||  |||| ||  |||  ||||||||||||||||| |||||  |    
45872774 tttgggtgttccgcatatatacggaacactttttctttgtatgttgttttttaagtctcatagcctagtattccttgtgcttgctaggattatatgtgtt 45872675  T
98 ttaaataaatttcatttta 116  Q
    |||||||||||||||||||    
45872674 ttaaataaatttcatttta 45872656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 56092799 - 56092924
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt 97  Q
    |||| ||||||||||||||||| | ||||||||||| |||||  || | ||| | ||| ||||| || ||||  ||||||||||||||||||| ||  |     
56092799 tttgtgtgttccgcatatatacgacacacttttcctgtgtatattgttttttaattctcctagcctagcattccttgtgcttgctaggattctttgcatg 56092898  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||    
56092899 ttaaataaatttcattttagcttctt 56092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46743382 - 46743507
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgtt 97  Q
    ||||| ||||||||| |||||| | ||||||||  |||||||| |||||||| | ||| ||| |||| ||||  ||||||||||||||||||  | ||||    
46743382 tttggatgttccgcacatatacgaaacactttttgtttgtatgttgctctttaaatctcctaacttagcattccttgtgcttgctaggattctttgtgtt 46743481  T
98 ttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||| ||||||    
46743482 ttaaataaatttcattttaccttctt 46743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 3460939 - 3461059
Alignment:
6 gtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttttaaa 102  Q
    ||||||||| ||||||| | |||||||||||||||||| |||| ||| ||||||||||| || ||||  | ||||| | ||||||||  || ||||| ||    
3460939 gtgttccgcgtatatacggtacacttttcctttgtatgttgctatttaagtcttctagcctagcattcctcgtgctagttaggattctttacgttttgaa 3461038  T
103 taaatttcattttagcttctt 123  Q
    |||||||||||||| ||||||    
3461039 taaatttcattttaacttctt 3461059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 52991862 - 52991919
Alignment:
68 cattttttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt 123  Q
    ||||| ||||| ||||||||||||| |||  |||||||||||||||||||||||||||    
52991862 catttcttgtgtttgctaggattctttgtgttttaaataaatttcattttagcttctt 52991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 52700601 - 52700634
Alignment:
90 tctatgttttaaataaatttcattttagcttctt 123  Q
    ||||||||||||||||||||||||||||||||||    
52700601 tctatgttttaaataaatttcattttagcttctt 52700634  T

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Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 2790 - 2665
Alignment:
1 tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt 97  Q
    ||||| |||||||||||||||| | |||||||||||||||||| ||||  || ||||| ||||  || ||||  ||||||||||||||||||| |  |||    
2790 tttggatgttccgcatatatacggcacacttttcctttgtatgttgcttgttaagtctcctagtctagcattccttgtgcttgctaggattctttgcgtt 2691  T
98 ttaaataaatttcattttagcttctt 123  Q
    || ||||| ||||||||||| |||||    
2690 ttgaataagtttcattttagtttctt 2665  T

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Target: scaffold0974 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 2905 - 3030
Alignment:
1 tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt 97  Q
    |||||||||||| ||||||||| | ||||||||| ||| |||| | ||  || ||||| |||||  ||||||  ||||||||||||||||||| ||  ||    
2905 tttgggtgttccacatatatacgacacacttttcttttatatgttcctacttaagtctcctagccaaacattccttgtgcttgctaggattctttgtctt 3004  T
98 ttaaataaatttcattttagcttctt 123  Q
    |||||||||  |||||||| ||||||    
3005 ttaaataaacctcattttatcttctt 3030  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 269662 - 269590
Alignment:
53 agtcttctagcttaacattttttgtgcttgctaggattctatg--ttttaaataaatttcattttagcttctt 123  Q
    |||||||||||||| ||||| || |||||||||  ||||| ||  ||||||||||||||||||||| ||||||    
269662 agtcttctagcttagcatttcttatgcttgctaaaattctctgagttttaaataaatttcattttaacttctt 269590  T

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