View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10916_low_41 (Length: 241)
Name: NF10916_low_41
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_41 |
 |  |
|
| [»] scaffold0083 (1 HSPs) |
 |  |  |
|
| [»] scaffold0974 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 34293911 - 34294124
Alignment:
| Q |
9 |
ttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgttttaaataaatt |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34293911 |
ttccgcatatatacggacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctgtgttttaaataaatt |
34294010 |
T |
 |
| Q |
109 |
tcattttagcttcttnnnnnnnnnncatctaaccacataatttgatataccatttatatataggtatgcatatttaaacaattaaatcatatttttatgg |
208 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34294011 |
tcattttagcttctt-aaaaaaaaacatctaaccacataatttgatataccatttatatataggtatgcatatttaaacaattaaatcatatttttatgg |
34294109 |
T |
 |
| Q |
209 |
aaaaatagtttaaat |
223 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34294110 |
aaaaatagtttaaat |
34294124 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10365542 - 10365418
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
||||| |||| | ||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |||| ||||||||||||||||||| | ||||| |
|
|
| T |
10365542 |
tttggctgttgcacatatatacagtcacttttcccttctatggtgctctttaagtcttctagcttagcattctttgtgcttgctaggattctttgtgttt |
10365443 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10365442 |
taaataaatttcattttagcttctt |
10365418 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32978867 - 32978745
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttta |
100 |
Q |
| |
|
||||| || |||||||||| ||||||||||||| ||| |||| | |||||| ||||| |||||||| ||| || |||||||||||||||| ||||||| |
|
|
| T |
32978867 |
tttggatgatccgcatataaacagacacttttcttttatatgttactctttaagtctcatagcttaatattccttatgcttgctaggattctgtgtttta |
32978768 |
T |
 |
| Q |
101 |
aataaatttcattttagcttctt |
123 |
Q |
| |
|
| |||||||||||||| |||||| |
|
|
| T |
32978767 |
attaaatttcattttaacttctt |
32978745 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 31038745 - 31038620
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt |
97 |
Q |
| |
|
|||| |||||||| ||||||| | |||||||||||||||||| |||| ||| ||| | |||| || |||| ||||||| | || |||||| | ||| |
|
|
| T |
31038745 |
tttgagtgttccgtgtatatacgacacacttttcctttgtatgttgctatttaagtatcttagcctagcattccttgtgctagataagattctttacgtt |
31038646 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31038645 |
ttaaataaatttcattttagcttctt |
31038620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 21591032 - 21591148
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t |
97 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||| ||||||| | | ||| ||||| ||| |||| |||| ||||||||||||| ||||| ||| | |
|
|
| T |
21591032 |
tttgggtgttctgcatatatacgacacacttttctcttgtatgtt--tttttaagtctcctaacttagcattccttgtgcttgctagaattctttgtgtt |
21591129 |
T |
 |
| Q |
98 |
ttaaataaatttcatttta |
116 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21591130 |
ttaaataaatttcatttta |
21591148 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 8038988 - 8038864
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctagga--ttctatgttt |
98 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||| |||| ||||||||||||||| || | ||||| |
|
|
| T |
8038988 |
tttgggtgttccgcatatatacatacacttttcctttatatggtgttctttaagtcttctagcttagcattccttgtgcttgctaggattttttgtgttt |
8038889 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8038888 |
taaataaatttcattttagcttctt |
8038864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4654165 - 4654289
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||| |||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||| | ||||| |
|
|
| T |
4654165 |
tttgagtgttccacatatatagagacactttccctttgtatgttgctctttaagtcttctagcttagcattccctgtgcttgctaggattctttgtgttt |
4654264 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
4654265 |
taaataattttcattttagcttctt |
4654289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27787236 - 27787360
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tt |
98 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| || ||||| ||||| |||||||| |||| |||||||||||| |||||| ||| || |
|
|
| T |
27787236 |
tttgggtgttccgcatatatatggacacttttcgtttgtatgttgttctttaagtctcctagcttagcattccttgtgcttgctaagattctttgtgctt |
27787335 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27787336 |
taaataaatttcattttagcttctt |
27787360 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 47896474 - 47896349
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctc-tttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt |
97 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||| ||||| ||| ||||||||| ||||||||| || |||||||||||||||| || || |
|
|
| T |
47896474 |
tttggatgttccgcatatatacggacactttttctttgtatgttgctcttttaagtcttctaacttaacattccttatgcttgctaggattctttgtatt |
47896375 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
47896374 |
ttaaataaatttcattttaacttctt |
47896349 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 15495631 - 15495508
Alignment:
| Q |
3 |
tgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct--atgtttt |
99 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| |||||| |||||| |
|
|
| T |
15495631 |
tgggtgttccgcatatataaggcacacttttcctttgtatgttgctttttaagtctcctagcctagcatttcttgtgcatgctatgattcttagtgtttt |
15495532 |
T |
 |
| Q |
100 |
aaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15495531 |
aaataaatttcattttagcttctt |
15495508 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10494444 - 10494319
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt |
97 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||| ||| ||||| ||||| ||||| ||||||||||||||||||| | ||| |
|
|
| T |
10494444 |
tttgggtgttctgcatatatacaacacacttttcctttgtatgttgctatttaagtctcctagccagacattccttgtgcttgctaggattctttgcgtt |
10494345 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
10494344 |
ttgaataaatttcattttagcttctt |
10494319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26842787 - 26842701
Alignment:
| Q |
37 |
tgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgttttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||| |||| ||| ||||| ||| | || |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26842787 |
tgtatgttgctttttaagtctcctaacctagcattccttgtgcttgctaggattctgtgttttaaataaatttcattttagcttctt |
26842701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 40581081 - 40581171
Alignment:
| Q |
34 |
ctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| |||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
40581081 |
ctttgtatgttgct-tttaagtcttctagcttagcattccttgtgcttgctaagattctttgtgttttaaataaatttcattttagcttctt |
40581171 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 14351727 - 14351853
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgct-ctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--t |
96 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| |||| |||| || | |||| || |||| ||||||| ||||||||||| || | |
|
|
| T |
14351727 |
tttgggtgttccgcatatatacgacacacttttcctttgtatgttgctactttaagattcctagtctagcattccttgtgctcgctaggattctttgcat |
14351826 |
T |
 |
| Q |
97 |
tttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
14351827 |
tttgaataaatttcattttagcttctt |
14351853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 25537361 - 25537235
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttca-gtcttctagcttaacattttttgtgcttgctaggattctatg--t |
96 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| |||||| || | ||| | |||| ||||| || |||| |||||||||||||||||||| || | |
|
|
| T |
25537361 |
tttgtgtgttccgcatatatacgacacacttttcctgtgtatgttgtttttttaagtctcctagcctagcattctttgtgcttgctaggattctttgcat |
25537262 |
T |
 |
| Q |
97 |
tttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
25537261 |
gttaaataaatatcattttagcttctt |
25537235 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 29099114 - 29099063
Alignment:
| Q |
74 |
ttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
29099114 |
ttgtgcttgctaggattctttgtgttttaaataaatttcattttaacttctt |
29099063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 11366510 - 11366388
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttta |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||| ||| |||| || ||||||||| ||||| ||||||| |
|
|
| T |
11366510 |
tttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaagtcttttaggttagcattccttatgcttgctaaaattctgtgtttta |
11366411 |
T |
 |
| Q |
101 |
aataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
11366410 |
aataaatttcattttaacttctt |
11366388 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 31026767 - 31026892
Alignment:
| Q |
3 |
tgggtgttccgcatatatacag-acacttttcctttgta--tggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct--atgtt |
97 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||||| || |||| ||| ||||||||||| |||||||| || |||||||||||||||| |||| |
|
|
| T |
31026767 |
tgggtgttctgcatatatacggcacacttttcctttgtaaatgttgctttttaagtcttctagcctaacatttcttatgcttgctaggattcttagtgtt |
31026866 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
31026867 |
ttaaataaatttcattttaacttctt |
31026892 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 78525 - 78406
Alignment:
| Q |
7 |
tgttccgcatatatacaga-cacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gttttaaat |
103 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| | || ||| ||||| ||||| | ||||| ||||||||||||||||||| | ||||| ||| |
|
|
| T |
78525 |
tgttccgcatatatacggctcacttttcctttgtatgttcctatttaagtctcctagccaagcatttcttgtgcttgctaggattctttgcgttttgaat |
78426 |
T |
 |
| Q |
104 |
aaatttcattttagcttctt |
123 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
78425 |
aaacttcattttagcttctt |
78406 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 9566579 - 9566470
Alignment:
| Q |
9 |
ttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--tttaaataaa |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||| ||| ||| |||| |||| ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
9566579 |
ttccgcatatatacggacacttttcctttgcatggtgct-tttaagttctcta------cattccttgtgcttgctaggattctttgtgttttaaataaa |
9566487 |
T |
 |
| Q |
107 |
tttcattttagcttctt |
123 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
9566486 |
tttcattttaacttctt |
9566470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10670494 - 10670618
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttt |
99 |
Q |
| |
|
||||| ||||| |||||||||| | | |||||||||||||||| || | ||| ||||| ||| |||| |||| |||||||| ||| ||||| ||||| |
|
|
| T |
10670494 |
tttggatgttctgcatatatacgacaaacttttcctttgtatgttgttttttaagtctcctaacttagcattacttgtgcttattagaattctgggtttt |
10670593 |
T |
 |
| Q |
100 |
aaataaattt-cattttagcttctt |
123 |
Q |
| |
|
|||||||||| ||||||| |||||| |
|
|
| T |
10670594 |
aaataaatttccattttaacttctt |
10670618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27888423 - 27888306
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| | ||| |||| ||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
27888423 |
tttgggtgttccgcatatatacggacacttttcctttgtatgttgctctttaattctcctagtttagcattcgttgtgcttgctaggattctttatgttt |
27888324 |
T |
 |
| Q |
99 |
taaataaatttcatttta |
116 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27888323 |
taaataaatttcatttta |
27888306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 6705263 - 6705141
Alignment:
| Q |
3 |
tgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta-tgtttta |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| || | ||| ||||| ||||| || |||| || |||||||| |||| || ||||||| |
|
|
| T |
6705263 |
tgggtgttccgcatatatacgacacacttttcctttgtatgttgttttttaagtctcctagcctagcattccttatgcttgctgggatcttagtgtttta |
6705164 |
T |
 |
| Q |
101 |
aataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6705163 |
aataaatttcattttagcttctt |
6705141 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1532949 - 1532826
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||||| |||||||| | ||| ||| ||| | ||| |||| ||| |||||||| | ||||| |
|
|
| T |
1532949 |
tttggatgttccgcatatatatagacacttttcgtttgtatgttgctctttaaatctcctaactt-agattccttgtacttattaggattctttgtgttt |
1532851 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
1532850 |
gaaataaatttcattttaccttctt |
1532826 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6186808 - 6186933
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgct-ctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt |
97 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||| |||||||| | || |||| || | |||| || |||| ||||||| ||||||||||| || || |
|
|
| T |
6186808 |
tttgggtgctccgcatatatatacacacttttcatttgtatgtttctactttaagattcctagtctagcattgcttgtgctcgctaggattctttgcatt |
6186907 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
6186908 |
ttgaataaatttcattttagcttctt |
6186933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14951384 - 14951426
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatg |
42 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
14951384 |
tttgggtgttccgcatatatacgacacacttttcctttgtatg |
14951426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9910223 - 9910131
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct |
92 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||||| | || || ||||| |||| |||||| |||||||||||| |||||| |
|
|
| T |
9910223 |
tttggatgttccgcatatatacgacacacttttcctttgtatgttcctacttaagtctcatagccaaacattccttgtgcttgctacgattct |
9910131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38498988 - 38498866
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| |||||||| |||||| | |||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
38498988 |
tttgggtgttccgcatatg--cggacacttttcctttgtatgttgctctttaagtcttatggcttaacattccctgtgcttgctaggattctttgtgttt |
38498891 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
38498890 |
taaataaatttcattttaacttctt |
38498866 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10181710 - 10181587
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacagacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttt |
98 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||| |||| ||| ||||| ||||||||||||| || | |||| |||||||| | ||||| |
|
|
| T |
10181710 |
tttggatgttccgcatatatacagacacttctcctttgtatgttgct-tttaagtctcttagcttaacatttcttatacttgttaggattctttgtgttt |
10181612 |
T |
 |
| Q |
99 |
taaataaatttcattttagcttctt |
123 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
10181611 |
tcaataaatttcattttagcttctt |
10181587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 15050533 - 15050658
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt |
97 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| |||||| || | ||| | ||| ||||| || |||| ||||||||||||| ||||| || | |
|
|
| T |
15050533 |
tttgtgtgttccgcatatatacggcacacttttcctgtgtatgttgttttttaattctcctagcctagcattccttgtgcttgctagaattctttgcatg |
15050632 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15050633 |
ttaaataaatttcattttagcttctt |
15050658 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5514928 - 5514803
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt |
97 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || ||||||||| | || || ||||| |||| | | |||| |||||||||||| |||||| | ||| |
|
|
| T |
5514928 |
tttgggtgttccgcatatatacgacacactctttctttgtatgttcctacttaagtctcctagttaagcattctttgtgcttgcttagattctttgcgtt |
5514829 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|| |||||| ||||||||| |||||| |
|
|
| T |
5514828 |
ttgaataaacttcattttaccttctt |
5514803 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 39582155 - 39582211
Alignment:
| Q |
68 |
cattttttgtgcttgctaggattctatgtttt-aaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||| |||||||||| ||||||| | |||||| |||||||||| ||||||||||||| |
|
|
| T |
39582155 |
cattctttgtgcttgttaggattgtgtgtttttaaataaattttattttagcttctt |
39582211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26331914 - 26332039
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt |
97 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||||| |||| ||| | ||| ||||| || |||| |||||||||||||||||||| |||| |
|
|
| T |
26331914 |
tttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattctatttgtt |
26332013 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
26332014 |
ttaaataaatttcattttaacttctt |
26332039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 40680629 - 40680507
Alignment:
| Q |
3 |
tgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta-tgtttta |
100 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||| |||| ||| ||||| || | || |||| ||||||||||||| || || ||||||| |
|
|
| T |
40680629 |
tgggtgttccgcatatatacggcacacttttcctttgtatgttgctttttaagtctcttaacctagcattccttgtgcttgctagaatcttagtgtttta |
40680530 |
T |
 |
| Q |
101 |
aataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
40680529 |
aataaatttcattttaccttctt |
40680507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26331572 - 26331664
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct |
92 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||||| |||| ||| | ||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
26331572 |
tttggatgttccgcatatatacgaaacacttttcctttgtatgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattct |
26331664 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 24867564 - 24867687
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t |
97 |
Q |
| |
|
||||| ||||||||||||| || | ||| |||| ||||||| | |||| ||| ||||||||| | || |||| ||||||||||||| ||||| ||| | |
|
|
| T |
24867564 |
tttggatgttccgcatatacacgacacattttttctttgtacgctgctttttaagtcttctaacctatcattccttgtgcttgctagtattctttgtgtt |
24867663 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttc |
121 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
24867664 |
ttaaataaatttcattttaacttc |
24867687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 11470377 - 11470348
Alignment:
| Q |
94 |
tgttttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11470377 |
tgttttaaataaatttcattttagcttctt |
11470348 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 42221041 - 42220945
Alignment:
| Q |
29 |
ttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--ttttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||| |||| ||| ||||| ||||| || | || | ||||| ||||||||||| || |||| ||| ||||||||||||||||||| |
|
|
| T |
42221041 |
ttttcctttgtatgttgctatttaagtctcctagcctagccttcctcgtgctagctaggattctttgcgttttgaattaatttcattttagcttctt |
42220945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 42269307 - 42269430
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt |
97 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||| || |||||| | || || ||||| |||||| | |||| || ||||||||| |||||| | ||| |
|
|
| T |
42269307 |
tttgagtgttccgcatatatacaacacactttttctctgtatgttcctacttaagtctcctagctaagcattccttatgcttgctaagattctttgcgtt |
42269406 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttc |
121 |
Q |
| |
|
|| |||||| |||||||||||||| |
|
|
| T |
42269407 |
ttgaataaacttcattttagcttc |
42269430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42678095 - 42678218
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgtttt |
99 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |||| | || ||| ||||| ||||| || ||||| | ||||||||||||||||| |||||| |
|
|
| T |
42678095 |
tttgggtgttccacatatatacgagacacttttcctttttatgttactttttaagtctcctagcctagcatttctcgtgcttgctaggattctctgtttt |
42678194 |
T |
 |
| Q |
100 |
aaataaatttcattttagcttctt |
123 |
Q |
| |
|
||| ||||| ||||||| |||||| |
|
|
| T |
42678195 |
aaacaaattccattttaacttctt |
42678218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14440860 - 14440735
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt |
97 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||| |||| || | ||| ||||| |||| |||||||| ||||||||| ||||||||| |||| |
|
|
| T |
14440860 |
tttgggtgttccgcatatatacgacaaacttttccttagtatattgttttttaagtctcctagtctaacatttcttgtgcttgttaggattcttagtgtt |
14440761 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14440760 |
ttaaataaatttcattttagcttctt |
14440735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12130266 - 12130141
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattcta--tgtt |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | |||||| |||| ||| ||||| ||||| || |||| || ||| |||||||||||| |||| |
|
|
| T |
12130266 |
tttgggtgttccgcatatatacatcacacttttcttctgtatgatgctttttaagtctcctagcctagcattccttctgcatgctaggattcttagtgtt |
12130167 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
12130166 |
ttaaatagatttcattttagcttctt |
12130141 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45872774 - 45872656
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacaga-cacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatgt--t |
97 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||||||||| || | ||| ||||| |||| || ||| ||||||||||||||||| ||||| | |
|
|
| T |
45872774 |
tttgggtgttccgcatatatacggaacactttttctttgtatgttgttttttaagtctcatagcctagtattccttgtgcttgctaggattatatgtgtt |
45872675 |
T |
 |
| Q |
98 |
ttaaataaatttcatttta |
116 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45872674 |
ttaaataaatttcatttta |
45872656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 56092799 - 56092924
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt |
97 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| ||||| || | ||| | ||| ||||| || |||| ||||||||||||||||||| || | |
|
|
| T |
56092799 |
tttgtgtgttccgcatatatacgacacacttttcctgtgtatattgttttttaattctcctagcctagcattccttgtgcttgctaggattctttgcatg |
56092898 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
56092899 |
ttaaataaatttcattttagcttctt |
56092924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46743382 - 46743507
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgtt |
97 |
Q |
| |
|
||||| ||||||||| |||||| | |||||||| |||||||| |||||||| | ||| ||| |||| |||| |||||||||||||||||| | |||| |
|
|
| T |
46743382 |
tttggatgttccgcacatatacgaaacactttttgtttgtatgttgctctttaaatctcctaacttagcattccttgtgcttgctaggattctttgtgtt |
46743481 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
46743482 |
ttaaataaatttcattttaccttctt |
46743507 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 3460939 - 3461059
Alignment:
| Q |
6 |
gtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattc--tatgttttaaa |
102 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||| |||| ||| ||||||||||| || |||| | ||||| | |||||||| || ||||| || |
|
|
| T |
3460939 |
gtgttccgcgtatatacggtacacttttcctttgtatgttgctatttaagtcttctagcctagcattcctcgtgctagttaggattctttacgttttgaa |
3461038 |
T |
 |
| Q |
103 |
taaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
3461039 |
taaatttcattttaacttctt |
3461059 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 52991862 - 52991919
Alignment:
| Q |
68 |
cattttttgtgcttgctaggattctatgt--tttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
52991862 |
catttcttgtgtttgctaggattctttgtgttttaaataaatttcattttagcttctt |
52991919 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 52700601 - 52700634
Alignment:
| Q |
90 |
tctatgttttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52700601 |
tctatgttttaaataaatttcattttagcttctt |
52700634 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 2790 - 2665
Alignment:
| Q |
1 |
tttgggtgttccgcatatatacag-acacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctat--gtt |
97 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||||| |||| || ||||| |||| || |||| ||||||||||||||||||| | ||| |
|
|
| T |
2790 |
tttggatgttccgcatatatacggcacacttttcctttgtatgttgcttgttaagtctcctagtctagcattccttgtgcttgctaggattctttgcgtt |
2691 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|| ||||| ||||||||||| ||||| |
|
|
| T |
2690 |
ttgaataagtttcattttagtttctt |
2665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0974 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0974
Description:
Target: scaffold0974; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 2905 - 3030
Alignment:
| Q |
1 |
tttgggtgttccgcatatatac-agacacttttcctttgtatggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattctatg--tt |
97 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||| ||| |||| | || || ||||| ||||| |||||| ||||||||||||||||||| || || |
|
|
| T |
2905 |
tttgggtgttccacatatatacgacacacttttcttttatatgttcctacttaagtctcctagccaaacattccttgtgcttgctaggattctttgtctt |
3004 |
T |
 |
| Q |
98 |
ttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
||||||||| |||||||| |||||| |
|
|
| T |
3005 |
ttaaataaacctcattttatcttctt |
3030 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 269662 - 269590
Alignment:
| Q |
53 |
agtcttctagcttaacattttttgtgcttgctaggattctatg--ttttaaataaatttcattttagcttctt |
123 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||| ||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
269662 |
agtcttctagcttagcatttcttatgcttgctaaaattctctgagttttaaataaatttcattttaacttctt |
269590 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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