View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_43 (Length: 235)
Name: NF10916_low_43
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 40127856 - 40128061
Alignment:
| Q |
14 |
cacagaaacattctgaagtctagaagtattggtcacgatatagggatcagagtcaatatcattgtccatgaagcttcctgtgctgctaagagcccaatcc |
113 |
Q |
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| T |
40127856 |
cacagaaacattctgaagactagaagtattggtcacgatatagggatcagagtcaatatcattgtccatgaagcttcctgtgctgctaagagcccaatcc |
40127955 |
T |
|
| Q |
114 |
tcagcagcaatatataacattgaagcgccttttcgttctatgtcagctgtataaatattaccactaacatttgcttcattacctccgcagttaatgcgta |
213 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40127956 |
tcagcagaaatatataacattgaagcgccttttcgttctatgtcagctgtataaatattaccactaacatttgcttcattacctccgcagttaatgcgta |
40128055 |
T |
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| Q |
214 |
gggagt |
219 |
Q |
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|||||| |
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| T |
40128056 |
gggagt |
40128061 |
T |
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