View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10916_low_45 (Length: 221)

Name: NF10916_low_45
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10916_low_45
NF10916_low_45
[»] chr3 (7 HSPs)
chr3 (17-198)||(48446390-48446571)
chr3 (21-182)||(14349621-14349782)
chr3 (20-182)||(13464493-13464655)
chr3 (125-171)||(7161294-7161340)
chr3 (127-176)||(2850458-2850507)
chr3 (34-92)||(7174840-7174898)
chr3 (130-180)||(27814926-27814976)
[»] chr1 (1 HSPs)
chr1 (40-190)||(43099309-43099462)
[»] chr4 (1 HSPs)
chr4 (20-180)||(38489938-38490101)
[»] chr7 (4 HSPs)
chr7 (41-188)||(47367631-47367781)
chr7 (128-182)||(39425390-39425444)
chr7 (128-182)||(39456796-39456850)
chr7 (127-182)||(39438492-39438547)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 48446390 - 48446571
Alignment:
Q  17 cataggcacagaatacgagttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48446390 cataggcacagaatacgagttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgac 48446489  T
Q  117 cgaatgaaactgaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattgaggatgacagttacgcc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48446490 cgaatgaaactgaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattgaggatgacagttacgcc 48446571  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 14349782 - 14349621
Alignment:
Q  21 ggcacagaatacgagttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgaccgaa 120  Q
    |||||| |||| |||||  |||||| |||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||  ||| ||    
T  14349782 ggcacaaaatatgagtttgaatttgcaaaatatattatgcagcattcaaaagtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaaa 14349683  T
Q  121 tgaaactgaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattga 182  Q
    ||   |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  14349682 tgtcgctgaaactatcttcatgctcaaggggctctacaacatgtaaacttttatttgattga 14349621  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 13464655 - 13464493
Alignment:
Q  20 aggcacagaatacgagttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgaccga 119  Q
    ||||||| |||| |||||  |||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||  ||| |    
T  13464655 aggcacaaaatatgagtttgaatttgcaaaatatattatgcagcattcaaacgtactagaaaccatgacaattaagagtacctgccttgaaaagtaccaa 13464556  T
Q  120 atgaaactgaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattga 182  Q
    |||   |||||| ||||||||||| ||||||||||||||| ||||||||||  ||||||||||    
T  13464555 atgtcgctgaaactatcttcatgctcaaggggctctacaagatgtaaactttaatttgattga 13464493  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 7161340 - 7161294
Alignment:
Q  125 actgaaattatcttcatgcacaaggggctctacaacatgtaaacttc 171  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  7161340 actgaaatcatcttcatgcacaaggggatctacaacatgtaaacttc 7161294  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 2850507 - 2850458
Alignment:
Q  127 tgaaattatcttcatgcacaaggggctctacaacatgtaaacttctattt 176  Q
    ||||||||||||||| ||||| |||| ||||||||||||||||| |||||    
T  2850507 tgaaattatcttcatccacaatgggccctacaacatgtaaacttttattt 2850458  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 7174898 - 7174840
Alignment:
Q  34 agttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaatt 92  Q
    |||||||||||| |||||||||||||||| || | || ||||| ||||||||| |||||    
T  7174898 agttcaaatttgcaaaatatattatgcagaatgctaatgtactagagaccatggcaatt 7174840  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 27814976 - 27814926
Alignment:
Q  130 aattatcttcatgcacaaggggctctacaacatgtaaacttctatttgatt 180  Q
    |||||||||||| ||||| ||| | |||||||||||||||| |||||||||    
T  27814976 aattatcttcatccacaaagggttttacaacatgtaaacttttatttgatt 27814926  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 43099309 - 43099462
Alignment:
Q  40 aatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagta--cctgccttgaaaatgaccgaatgaaact-gaaattatc 136  Q
    |||||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||  ||| || | |||  |||| ||||    | |||||||||    
T  43099309 aatttgcaaaatatattatgcagcattcaaaagtactagagactatgaaaattcagagtatacctaccctcaaagggaccaaatgttttttgaaattatc 43099408  T
Q  137 ttcatgcacaaggggctctacaacatgtaaacttctatttgattgaggatgaca 190  Q
     ||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  43099409 atcatgtacaaggggctctacaacatgtaagcttttatttgattgacgatgaca 43099462  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 38490101 - 38489938
Alignment:
Q  20 aggcacagaatacgagttcaaatttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgaccga 119  Q
    ||||||| || | |||||| | |||| | ||||||||||||| |||||||| ||||| |||||||||| ||||||||| | |||||||||||| |||| |    
T  38490101 aggcacaaaacatgagttcgattttgcagaatatattatgcaccattcaaaggtactagagaccatgaaaattcagagaaactgccttgaaaaggaccaa 38490002  T
Q  120 atgaaactgaaattatcttcatgcacaa---ggggctctacaacatgtaaacttctatttgatt 180  Q
     ||  | ||||||||| ||||| || ||   ||||||||||| |||||||| || |||||||||    
T  38490001 gtgttagtgaaattatattcatacataagggggggctctacagcatgtaaaattttatttgatt 38489938  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 47367781 - 47367631
Alignment:
Q  41 atttgtaaaatatattatgcagcattcaaacgtactcgagaccatgacaattcagagtacctgccttgaaaatgaccgaatgaaactgaaa---ttatct 137  Q
    ||||| |||||||||| |||| |||||||| ||||| ||||||||||||||| ||| | ||| ||||| |||  ||| || |    ||| |   ||||||    
T  47367781 atttgcaaaatatattgtgcaacattcaaaagtactagagaccatgacaattaagacttccttccttgcaaagaaccaaaagttcttgagaatattatct 47367682  T
Q  138 tcatgcacaaggggctctacaacatgtaaacttctatttgattgaggatga 188  Q
    |||| ||||||||||||| |||  ||||||||| ||||||||||| |||||    
T  47367681 tcatccacaaggggctctccaaattgtaaacttttatttgattgatgatga 47367631  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 39425390 - 39425444
Alignment:
Q  128 gaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattga 182  Q
    ||||||||||||| ||||||| |||||||||||||| |||||| ||||| |||||    
T  39425390 gaaattatcttcaagcacaagaggctctacaacatgcaaacttttatttaattga 39425444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 39456850 - 39456796
Alignment:
Q  128 gaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattga 182  Q
    ||||||||||||| ||||||| |||||||||||||| |||||| ||||| |||||    
T  39456850 gaaattatcttcaagcacaagaggctctacaacatgcaaacttttatttaattga 39456796  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 39438492 - 39438547
Alignment:
Q  127 tgaaattatcttcatgcacaaggggctctacaacatgtaaacttctatttgattga 182  Q
    ||||| |||||||||  ||||| |||||||| |||||||||||| |||||||||||    
T  39438492 tgaaactatcttcatatacaagaggctctacgacatgtaaacttttatttgattga 39438547  T

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