View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_47 (Length: 215)
Name: NF10916_low_47
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 28635859 - 28636038
Alignment:
| Q |
1 |
agaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattg |
100 |
Q |
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| T |
28635859 |
agaagggatagcaaagaaagttatgcaaatgtggtggaagaattcattccaaaccataatgactcaatatccttagtgttgtctcgttttcaagctatcg |
28635958 |
T |
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| Q |
101 |
gtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttc-tggctaattggtttttgactttcagttaca |
179 |
Q |
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| T |
28635959 |
gtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttcttggctaattggtttttgactttcagttaca |
28636038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 28656366 - 28656529
Alignment:
| Q |
1 |
agaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattg |
100 |
Q |
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| T |
28656366 |
agaagggatagcaaagaaagctatgtaacggtggtggaagaatccattccaagccataatgcctccatgtccttagtgctcactcgtttccaagctattg |
28656465 |
T |
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| Q |
101 |
gtgttgacgttgaagccacggttgctcttttaggtaccaaacattcttc-tggctaattggttt |
163 |
Q |
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| T |
28656466 |
gtgttgatgttgaagccacggttgctcttttaggtaccaaacattcttcttggctaattggttt |
28656529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 28605954 - 28606095
Alignment:
| Q |
6 |
ggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattggtgtt |
105 |
Q |
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| T |
28605954 |
ggatagcaaagaaagctatgtaaaggtggtggaacaattcattccaaatcataatgactcaatatcctcagtgctttctagttttcaagccattggcatt |
28606053 |
T |
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| Q |
106 |
gacgttgaagccacggttgctcttttaggtaccaaacattct |
147 |
Q |
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| T |
28606054 |
gacgttgaagccacggttgctcttttaggtaccaaatattct |
28606095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 137
Target Start/End: Original strand, 28663407 - 28663542
Alignment:
| Q |
2 |
gaagggatagcaaagaaagctatgcaactgtggtggaagaattaattccaaaccataatgactcaatatccttagtgctctctcgttttcaagctattgg |
101 |
Q |
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| T |
28663407 |
gaagggatggcaaagaaagccatgtaacaatggtagaagaattcattccaaatcataatgactccatatccttagtgctttctcgttttcaagccattgg |
28663506 |
T |
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| Q |
102 |
tgttgacgttgaagccacggttgctcttttaggtac |
137 |
Q |
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| T |
28663507 |
tgtagacgttgaagcaactgttgctcttttaggtac |
28663542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 28636063 - 28636103
Alignment:
| Q |
175 |
ttacattaacatttactttcaaaagtcaaacataaacataa |
215 |
Q |
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| T |
28636063 |
ttacattaacatttactttcaaaagtcaaccataaacataa |
28636103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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