View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_48 (Length: 212)
Name: NF10916_low_48
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 43134937 - 43135121
Alignment:
| Q |
17 |
ataagtaaattagtcattgaaattataatcatcggtcataactgactttcttattttcgaattgataa---atacatctctaaaattataaaacgtcaat |
113 |
Q |
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| T |
43134937 |
ataagtaaattagtcattgaaattataatcatcggtcataactgactttcttattttcgaattgataataaatacatctctaaaattataaaacgtcaat |
43135036 |
T |
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| Q |
114 |
nnnnnnngtccatctataaatgtttaccagcaaagattattatgtcacacaataacataataagtttgctcttcacaatgatgtc |
198 |
Q |
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| T |
43135037 |
aaaaaaagtccatctataaatgtttaccagcaaggattattatgtcacacaataacataataagtttgctattcacaatgatgtc |
43135121 |
T |
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