View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_5 (Length: 578)
Name: NF10916_low_5
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 5 - 562
Target Start/End: Original strand, 3132660 - 3133215
Alignment:
| Q |
5 |
agaagcaaaggttttcaatctcagttttaaattccgcgccttctagattataggcatttcaacggttgtgaaaatggattatggtttcatttatttctca |
104 |
Q |
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| T |
3132660 |
agaagccaaggttttcaatctcagttttaaattccgcgccttctagattataggcatttcaacggttgtgaaaatggattatggtttcatttatttctca |
3132759 |
T |
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| Q |
105 |
gcatttcacagatggatagatacttgaagcctttttcttatctattaaatattaattaactacttcagtaaatcccaaaatcaaagaaattgatcaattg |
204 |
Q |
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| T |
3132760 |
gcatttcacagatggatagatacttgaagcctttttcttatctattaaatattaattaactacttcagtaaatcccaaaatcaaagaaattgatcaattg |
3132859 |
T |
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| Q |
205 |
atttgaacatgcttttatattattaatatttggtccaaagaatatagataatactagctggctaggggagagtctaatggcatacttgaaattggtccac |
304 |
Q |
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| T |
3132860 |
atttgaacatgcttttatattattaatatttggtccaaagaatatagataatactagctggctaggggagagtctaatggcatacttgaaattggtccac |
3132959 |
T |
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| Q |
305 |
agttttgtacattttgatatttttcaacttcataaaacannnnnnnnccagtatgtgttgtgttgaacctaacttaataccagattttgcaattttaccc |
404 |
Q |
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| T |
3132960 |
agttttgtacattttgatatttttcaacttcataaaacattttttttccagtatgtgt--tgttgaacctaacttaataccagattttgcaattttaccc |
3133057 |
T |
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| Q |
405 |
aaaactttatatgattggttgcttaatatgaaaattattctattattaagtatttttgaagtattaaaatcagtcacatatttgtttggataccataagg |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133058 |
aaaactttatatgattggttgcttaatatgaaaattattctattattaagtatttttgaagtattaaaatcagtcacatatttgtttggataccataagg |
3133157 |
T |
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| Q |
505 |
gttaaatccagaaagtaattagagtatagaaaaagaaaatgaaacaataggaatatac |
562 |
Q |
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| T |
3133158 |
gttaaatccagaaagtaattagagtatagaaaaagaaaatgaaacaataggaatatac |
3133215 |
T |
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