View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10916_low_6 (Length: 575)
Name: NF10916_low_6
Description: NF10916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10916_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 31455494 - 31455177
Alignment:
| Q |
1 |
ataagcatttttgaaaatttgaagggccttcgagtcgcctattgaggaaagacaaatgctctttaggcaccaggatagacaactagaagtaacacttttt |
100 |
Q |
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| T |
31455494 |
ataagcatttttgaaaatttgaagggccttcgagtcgcttattgagcaaagacaaatgctctttaggcaccaggatagaagaccagaagtaacacttttt |
31455395 |
T |
|
| Q |
101 |
aaatcgggtgaaccgatttaaaaattgtctcaatcaatttcaaaagggttgttaactaccattaggtggatgtctgagagcaattactaggtacctaaag |
200 |
Q |
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| T |
31455394 |
aaatcgggtgaaccgatttaaaaattgtctcaatcgatctcaaaagggttgttaactaccattaggtggatgtctgagagcaatcactaggtacctaaag |
31455295 |
T |
|
| Q |
201 |
cgcaatcgtcttgagcaaattttaacttaaaaggcctacaaggcccaatactgaaagcagcaacagctattctggatcagcccacatgtgaaaaacccta |
300 |
Q |
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| T |
31455294 |
agcaatcgtcatgagcaaattttaacttaaaaggcctacaaggcccaatactgaaagcagcaacagttattctggatcagcccacatgtgaaaaacccta |
31455195 |
T |
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| Q |
301 |
gcgaaacaatcacactca |
318 |
Q |
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|||||||||||||||||| |
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| T |
31455194 |
gcgaaacaatcacactca |
31455177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 348 - 563
Target Start/End: Complemental strand, 31455138 - 31454923
Alignment:
| Q |
348 |
acacgccttgtgagcagctaaggtgttgaatccaacctcctctgcgaacatggcgtcaaccagtcgcacagtgttgcaattctcttcatcttcttcctct |
447 |
Q |
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| T |
31455138 |
acacgccttgtgagcagcgaaggtgttgaatccaacctcctctgcgaacatggcgtcaaccaatcgcacagtgttgcaattctcttcatcttcttcctct |
31455039 |
T |
|
| Q |
448 |
tcgcagagcttatccgctaaggttcaccctctcgtcgtattcaacatctgcgactgttacgttcgtcgccctgatcaagctgaacgcgtaattggaacgc |
547 |
Q |
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| T |
31455038 |
tcgcagagcttatccgctaaggttcaccctctcgtcgtattcaacatctgcgactgttacgttcgtcgccctgatcaagctgaacgcgtcattggaacgc |
31454939 |
T |
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| Q |
548 |
ttcttggatctgtgct |
563 |
Q |
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|||||||||||||||| |
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| T |
31454938 |
ttcttggatctgtgct |
31454923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 43182008 - 43182061
Alignment:
| Q |
92 |
acactttttaaatcgggtgaaccgatttaaaaattgtctcaatcaatttcaaaa |
145 |
Q |
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| T |
43182008 |
acacttttaaaatcggatgaaccgatttaaaaaatgtttcaaccaatctcaaaa |
43182061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 3707304 - 3707340
Alignment:
| Q |
93 |
cactttttaaatcgggtgaaccgatttaaaaattgtc |
129 |
Q |
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| T |
3707304 |
cactttttaaatcggttgaaccgatttaaaaaatgtc |
3707340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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