View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_high_1 (Length: 664)
Name: NF10918_high_1
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 644
Target Start/End: Original strand, 41675104 - 41675747
Alignment:
| Q |
1 |
tctggtatctattcctttccttttcattccctattttctaaattcttactatcttcgtatgcattattaccatcttctacttcaaattcttttgctaggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675104 |
tctggtatctattcctttccttttcattccctattttctaaattcttactatcttcatatgcattattaccatcttctacttcaaattcttttgctaggc |
41675203 |
T |
|
| Q |
101 |
ttattcaattcccctattcaatagccaagtttttattatgttaatgttttctcctgctcttt-aagtatatgtttgtatgtgaggtaggtttcgcaacca |
199 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
41675204 |
ttattcaattcccctattcaatatccaagtttt-attatgttaatgttttctcctgctcttttaagtgtatgtttgtatgtgaggtaggtttcccaacca |
41675302 |
T |
|
| Q |
200 |
tcatttttgttcaaccttcaaactatagcttttaccaaacttgttgtggctcactatgattcc-gacaatatcaccgtgaattcaaacatgccctagnnn |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41675303 |
tcatttttgttcaaccttcaaactatagcttttaccaaacttgttgtggctcactatgattcccgacaatatcaccgtgaattcaaacatgccctagttt |
41675402 |
T |
|
| Q |
299 |
nnnnnncatggtgagaaattctccaaacgcacagcgcaactactcaatagataggatttttagctttagtaagtcac-gagtatattgcgttgggagaca |
397 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
41675403 |
atttt-cttggtgagaaattctccaaacgcacagcgcaactactcaatagataggatttttagctttagtaagtcactgagtatattgcattgggagaca |
41675501 |
T |
|
| Q |
398 |
agaaacatcagtgaaatgcgtgttaaaaaaggctaactccttcaacttcttatatccttagttcaaaccggttgagttacccaatcctaagatgatgtta |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675502 |
agaaacatcagtgaaatgcgtgttaaaaaaggctaactccttcaacttcttatatccttagttcaaaccggttgagttacccaatcctaagatgatgtta |
41675601 |
T |
|
| Q |
498 |
ttgttataggagtgataaggtggtttttggaaggaacttaggattggagacataaggtattgaggattatcattaacaataatatttctaataactaatt |
597 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41675602 |
ttgttataggagtgataaggtggtttatggaaggaactta-gattggagacataaggtattgaggattatcattaacactaatatttctaataactaatt |
41675700 |
T |
|
| Q |
598 |
actaacatttaccatttnnnnnnnntaattacactgttgttatgatt |
644 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |
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| T |
41675701 |
actaacatttaccatttaaaaaaaataattacactgttgttatgatt |
41675747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 613
Target Start/End: Original strand, 26055532 - 26055561
Alignment:
| Q |
584 |
tctaataactaattactaacatttaccatt |
613 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
26055532 |
tctaataactaattactaacatttaccatt |
26055561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 12136536 - 12136493
Alignment:
| Q |
440 |
caacttcttatatccttagttcaaaccggttgagttacccaatcc |
484 |
Q |
| |
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||||||||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
12136536 |
caacttcttat-tccttagctcaaaccagttgagttacccaatcc |
12136493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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