View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10918_high_10 (Length: 273)
Name: NF10918_high_10
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 43169808 - 43169556
Alignment:
| Q |
16 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43169808 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
43169709 |
T |
|
| Q |
116 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43169708 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
43169609 |
T |
|
| Q |
216 |
atatctttggaaaccctgcagcagcaccaaagacaaacaatgagccctttgct |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43169608 |
atatctttggaaaccctgcagcagcaccaaagacaaacaatgagccctttgct |
43169556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 43218521 - 43218774
Alignment:
| Q |
16 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
115 |
Q |
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||||||||| |||||||||||| ||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||| |
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| T |
43218521 |
tttgctctgtaacgaaaatgagtgtgagcttcttagctcacatggtttccctcagaaccaactcactctttggaagtatccttcaatgttgaagaaggcc |
43218620 |
T |
|
| Q |
116 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
215 |
Q |
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| T |
43218621 |
gaccttaatggtcacacctcaaaggtgctgcacatg--acagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
43218718 |
T |
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| Q |
216 |
atatctttggaaacc---ctgcagcagcaccaaagacaaacaatgagccctttgct |
268 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
43218719 |
atatctttggaaacccagcagcagcagcaccaaagacaaacaatcagccctttgct |
43218774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 19025774 - 19025522
Alignment:
| Q |
16 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
115 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| ||||||||||| ||||| || |||||||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
19025774 |
tttgctctggaacaaaaacgagcgcgagcttcttagctcacatggtttgactaagaaccaaattaccctttggaagtatccttccatggtgaagatggct |
19025675 |
T |
|
| Q |
116 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
215 |
Q |
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|| ||||||||||||||||||| |||| || ||||| ||||||||||||||||||||| |||||| |||||||| || | |||| ||| | |||||| |
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| T |
19025674 |
gagcttaacggtcacacctcaagggtgttgtacatgacacagagtccagatgggtgtaccgtggcaactgcagctgcggatgagactctgagattttgga |
19025575 |
T |
|
| Q |
216 |
atatctttggaaaccctgcagcagcaccaaagacaaacaatgagccctttgct |
268 |
Q |
| |
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|| ||||||||| ||| |||| ||||||||||||| |||||||||||||| |
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| T |
19025574 |
atgtctttggaaccccaaaagcaacaccaaagacaaatcatgagccctttgct |
19025522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 20728862 - 20729114
Alignment:
| Q |
16 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
115 |
Q |
| |
|
||||||||||||| |||| ||||| ||||| ||||||||||| ||||| || |||||||| |||| ||||||||||||||||||||| ||||||||||| |
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| T |
20728862 |
tttgctctggaacaaaaacgagcgcgagcttcttagctcacatggtttgactaagaaccaaattaccctttggaagtatccttccatggtgaagatggct |
20728961 |
T |
|
| Q |
116 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagctaacgacgggactgtgaaaatttgga |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||| || ||||| ||||||||||||||||||||| |||||| |||||||| || | |||| ||| | |||||| |
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| T |
20728962 |
gagcttaacggtcacacctcaagggtgttgtacatgacacagagtccagatgggtgtaccgtggcaactgcagctgcggatgagactctgagattttgga |
20729061 |
T |
|
| Q |
216 |
atatctttggaaaccctgcagcagcaccaaagacaaacaatgagccctttgct |
268 |
Q |
| |
|
|| ||||||||| ||| |||| ||||||||||||| |||||||||||||| |
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| T |
20729062 |
atgtctttggaaccccaaaagcaacaccaaagacaaatcatgagccctttgct |
20729114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 18685918 - 18686091
Alignment:
| Q |
16 |
tttgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggct |
115 |
Q |
| |
|
||||||||||| | |||||||||| ||||| ||||||||||| ||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| || |
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| T |
18685918 |
tttgctctggagcaaaaatgagcgcgagcttcttagctcacatggtttgactcagaaccagcttaccctttggaagtatccttcaatgttgaagattgcc |
18686017 |
T |
|
| Q |
116 |
gaccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgcagc |
189 |
Q |
| |
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|| ||| | ||||||||||| | ||||||||||||| |||||||||||||||||| || |||||||||||||| |
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| T |
18686018 |
gagcttcatggtcacacctcgagggtgctgcacatgacacagagtccagatgggtctactgtggcatctgcagc |
18686091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 43526534 - 43526366
Alignment:
| Q |
18 |
tgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggctga |
117 |
Q |
| |
|
|||| |||||| | || ||||||||||| ||||||||||| |||||| | ||||||| ||||| ||||||||||||||||| ||| |||| ||||| || |
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| T |
43526534 |
tgctatggaaccagaacgagcgtgagctacttagctcacatggtttcaccgagaaccagcttaccctttggaagtatccttctatggtgaaaatggcaga |
43526435 |
T |
|
| Q |
118 |
ccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgc |
186 |
Q |
| |
|
|| || |||||||| || | ||||||| | ||||| ||||||||||||||||||| |||||||||||| |
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| T |
43526434 |
tctcaatggtcacacttcgagggtgctgtatatggcgcagagtccagatgggtgtacagtggcatctgc |
43526366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 13119073 - 13118904
Alignment:
| Q |
18 |
tgctctggaacgaaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggctga |
117 |
Q |
| |
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|||| |||||| | || ||||||||||| |||||||||||||||||| | ||||||| ||||| ||||||| |||||||| ||| ||| |||||| || |
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| T |
13119073 |
tgctgtggaaccagaacgagcgtgagcttcttagctcacacggtttcacggagaaccagcttaccctttggagctatccttcgatggtgaggatggcgga |
13118974 |
T |
|
| Q |
118 |
ccttaacggtcacacctcaaaggtgctgcacatggcacagagtccagatgggtgtaaagtggcatctgca |
187 |
Q |
| |
|
|| | |||||||| || | ||||||| |||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
13118973 |
gctcagaggtcacacttcgagggtgctgtgcatggcgcagagtccagatgggtgtacagtggcatctgca |
13118904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 16694884 - 16695022
Alignment:
| Q |
30 |
aaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggctgaccttaacggtca |
129 |
Q |
| |
|
||||||||| |||||| |||||||| || |||||| | ||||||| |||| || ||||||||| |||| ||| |||||||||| || || || ||||| |
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|
| T |
16694884 |
aaaatgagcctgagcttcttagctctcatggtttccatgagaaccagcttatcctatggaagtattcttcaatggtgaagatggcagagctcaagggtca |
16694983 |
T |
|
| Q |
130 |
cacctcaaaggtgctgcacatggcacagagtccagatgg |
168 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||||||| |
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|
| T |
16694984 |
tacctcgagggtgctgcacatgacacagagtccagatgg |
16695022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 17669120 - 17669258
Alignment:
| Q |
30 |
aaaatgagcgtgagctgcttagctcacacggtttctctcagaaccaacttactctttggaagtatccttccatgttgaagatggctgaccttaacggtca |
129 |
Q |
| |
|
||||||||| |||||| |||||||| || |||||| | ||||||| |||| || ||||||||| |||| ||| |||||||||| || || || ||||| |
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| T |
17669120 |
aaaatgagcctgagcttcttagctctcatggtttccatgagaaccagcttatcctatggaagtattcttcaatggtgaagatggcagagctcaagggtca |
17669219 |
T |
|
| Q |
130 |
cacctcaaaggtgctgcacatggcacagagtccagatgg |
168 |
Q |
| |
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||||| | ||||||||||||| |||||||||||||||| |
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| T |
17669220 |
tacctcgagggtgctgcacatgacacagagtccagatgg |
17669258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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