View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10918_high_5 (Length: 404)
Name: NF10918_high_5
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 7217252 - 7217550
Alignment:
| Q |
4 |
aggagaacccgagtttgattcttagctaaaacaattgatcagactttactgacatcccgaccaaactccagaaaactaggggccacttccctagaaattg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7217252 |
aggagaacccgagtttgattcttagctaaaacaattgatcagactttactgacatcccgaccaaactccagaaaactaggggccacttccctagaaattg |
7217351 |
T |
|
| Q |
104 |
gaggtttaacacataaaattatacaaaacaaaaacccgttattccttttgcatcaaaatcaaattttgatgatgatgataatacctataaacctaactca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7217352 |
gaggtttaacacataaaattatacaaaacaaaaacccgttattccttttgcatcaaagtcaaattttgatgatgatgataatacctataaacctaactca |
7217451 |
T |
|
| Q |
204 |
aaagcgaataaattcatnnnnnnnngaa-accattattctattttcatcaaaatcaaattttgcagatg---ataacacctataatttataaacctgac |
298 |
Q |
| |
|
||||||||||||||||| || | || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7217452 |
aaagcgaataaattcataaaaaataaaataaaatagttctattttcatcaaaatcaaattttgcagatgataataacacctataatttataaacctgac |
7217550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 7217598 - 7217647
Alignment:
| Q |
235 |
attattctattttcatcaaaatcaaattttgcagatgataacacctataa |
284 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
7217598 |
attattctcttatcatcaaaatcaaattttgaagatgataataccaataa |
7217647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 7217611 - 7217674
Alignment:
| Q |
154 |
catcaaaatcaaattttgatgatgatgataatacctataaacctaactcaaaagcgaataaattcat |
220 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||| || ||||||| || ||||||||| |
|
|
| T |
7217611 |
catcaaaatcaaattttgaagatg---ataataccaataaaccaaagtcaaaagagattaaattcat |
7217674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University