View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_high_8 (Length: 350)
Name: NF10918_high_8
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_high_8 |
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| [»] scaffold0191 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 37575041 - 37575376
Alignment:
| Q |
1 |
gagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgcaaatgattttctca |
100 |
Q |
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| T |
37575041 |
gagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgcaaatgattttctca |
37575140 |
T |
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| Q |
101 |
tgcatgcctagctagttagtatacacttgatttccttattttcagtaccttatctt-aaatgnnnnnnnnnnnnnccaataccttatcttaaatatttat |
199 |
Q |
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| T |
37575141 |
tgcatgcctagctagttagtatacacttgatttccttattttcagtaccttatcttaaaatgtttttccttttttccaataccttatcttaagtatttgt |
37575240 |
T |
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| Q |
200 |
cacaaatatctgaagattgctcacaatttcagaatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaattg |
299 |
Q |
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| T |
37575241 |
cacaaatatctgaagattgctcacaatttcagaatttctttataccgtgttacaatttgatagcgtcaggagctgtcagagggagaagcatatgcaattg |
37575340 |
T |
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| Q |
300 |
caggactcataccatctggctctgattcggatgtcc |
335 |
Q |
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| T |
37575341 |
cagaactcataccatctggctctgattcggatgtcc |
37575376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 37588984 - 37589098
Alignment:
| Q |
211 |
gaagattgctcacaatttcagaatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaattgcaggactcata |
310 |
Q |
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| T |
37588984 |
gaagatcgctcacattttcagaatttatttatattgtgttacaatgtgatagcgtcaagagctggcag-gggagaagcatatgcaattgcacgactcgga |
37589082 |
T |
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| Q |
311 |
ccatctggctctgatt |
326 |
Q |
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| T |
37589083 |
ccatctcgctctgatt |
37589098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 37588842 - 37588902
Alignment:
| Q |
14 |
caattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgca |
75 |
Q |
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| T |
37588842 |
caattgcaaagaataatcatattttcccgtg-caataatttttcagcatttttatggttgca |
37588902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 23812 - 23709
Alignment:
| Q |
232 |
aatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaattgcaggactcataccatctggctctgattcggat |
331 |
Q |
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| T |
23812 |
aatttcattatattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactcacaccatatggatctgatccggat |
23713 |
T |
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| Q |
332 |
gtcc |
335 |
Q |
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|||| |
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| T |
23712 |
gtcc |
23709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23989 - 23851
Alignment:
| Q |
1 |
gagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgcaaatgattttctca |
100 |
Q |
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|||||||||| | || |||||| |||| |||||||| || || |||| || |||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
23989 |
gagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaattt-atgcaaatgattttctca |
23891 |
T |
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| Q |
101 |
tgcatgcctagctagttagtatac---acttgatttcctt |
137 |
Q |
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| T |
23890 |
tgcacgcctagctagttattatacagtacttgatttcctt |
23851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10438161 - 10438299
Alignment:
| Q |
1 |
gagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgcaaatgattttctca |
100 |
Q |
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|||||||||| | ||||||||| |||| |||||||| | || ||| || |||||||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
10438161 |
gagtctgatcatcgaattgcaaagaataatcatatttctcaatgacaacaatttttcagcatttctatggttgcagaattt-atgcaaatgattttctca |
10438259 |
T |
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| Q |
101 |
tgcatgcctagctagttagtatac---acttgatttcctt |
137 |
Q |
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|||| ||||||||||||| ||||| ||||||||||||| |
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| T |
10438260 |
tgcacgcctagctagttattatacaatacttgatttcctt |
10438299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 335
Target Start/End: Original strand, 10438353 - 10438454
Alignment:
| Q |
232 |
aatttctttatatcgtgttacaatttgacagcgtcaggagctgtcagagggagaagcatatgcaattgcaggactcataccatctggctctgattcggat |
331 |
Q |
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|||||| |||||| ||||||| || ||||| |||||||| || ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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| T |
10438353 |
aatttcattatattgtgttaccat--gacagtgtcaggagttggcagagggagaagcatatgcaattgcaggactcacgccatatggatctgattcggac |
10438450 |
T |
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| Q |
332 |
gtcc |
335 |
Q |
| |
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|||| |
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| T |
10438451 |
gtcc |
10438454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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