View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_high_9 (Length: 319)
Name: NF10918_high_9
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 27559237 - 27558929
Alignment:
| Q |
1 |
acagtctcctaaatatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaggaagaatct |
100 |
Q |
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| T |
27559237 |
acagtctcctaaagatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaagaagaatct |
27559138 |
T |
|
| Q |
101 |
tatccacgacgagaatccaggcacagtcactgacatcattagggctaaagatatcgaccatttatcgacagtggcagatgataaatggacaggagacgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559137 |
tatccacgacgagaatccaggcacagtcactgacatcattagggctaaagatatcgaccatttatcgacagtggcagatgataaatggacaggagacgcc |
27559038 |
T |
|
| Q |
201 |
atcatattttcccatctttgtggtatgttttaaggctttacatcacactcctataaaggttaccccaatttttcttttgcataattgtttctttgtttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27559037 |
atcatattttcccatctttgtggtatgttttaaggctttacatcacactcctataaaggttaccccaatttttcttttgcataattgtttctttatttat |
27558938 |
T |
|
| Q |
301 |
gatgtttat |
309 |
Q |
| |
|
||||||||| |
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| T |
27558937 |
gatgtttat |
27558929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 42351684 - 42351991
Alignment:
| Q |
2 |
cagtctcctaaatatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaggaagaatctt |
101 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
42351684 |
cagtctcctaaagatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaagaagaacctt |
42351783 |
T |
|
| Q |
102 |
atccacgacgagaatccaggcacagtcactgacatcattagggctaaagatatcgaccatttatcgacagtggcagatgataaatggacaggagacgcca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42351784 |
atccacgacgagaatccaggcacagtcactgacatcattagggctaaagatatcgaccatttatcgacagtggcagatgataaatggacaggagacgccg |
42351883 |
T |
|
| Q |
202 |
tcatattttcccatctttgtggtatgttttaaggctttacatcacactcctataaaggttaccccaatttttcttttgcataattgtttctttgtttatg |
301 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||| |||| ||||| ||| |||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
42351884 |
tcatattttcccatcttcgcggtatgttttaaggcttcacattacacttctaaaaagattacaccaatttttcttttgtataattgtttctttgtttatg |
42351983 |
T |
|
| Q |
302 |
atgtttat |
309 |
Q |
| |
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|||||||| |
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| T |
42351984 |
atgtttat |
42351991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 50917068 - 50917262
Alignment:
| Q |
9 |
ctaaatatatggaacatgaatgactattctggagttgttggggtattcaattgccaaggagctggttggtgcaaagttggaaggaagaatcttatccacg |
108 |
Q |
| |
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||||| ||| |||||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||| |||||| || ||||||||||||||||| |
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| T |
50917068 |
ctaaagatacggaacatgaatgaccattctggagttattgaggtattcaattgtcaaggagccggttggtg-aaagttaaaaagaagaatcttatccacg |
50917166 |
T |
|
| Q |
109 |
acgagaatccaggcacagtcactgacat-------cattagggctaaagatatcgaccatttatcgacagtggcagatgataaatggacaggagac |
197 |
Q |
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| ||||||||||||||| |||||| ||| ||||||| |||||||||||||| || | ||| || |||||||||||||||||||||||| |
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| T |
50917167 |
atgagaatccaggcacaatcactggcatcattagccattaggactaaagatatcgactatcggttgacggttgcagatgataaatggacaggagac |
50917262 |
T |
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