View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_13 (Length: 266)
Name: NF10918_low_13
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 1715019 - 1714880
Alignment:
| Q |
13 |
tcactagcgtcaagactagaactattgtattcgtttttacttgtatatttatggtatgttctcaatattttagaatataccacaagtttaactaatattg |
112 |
Q |
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| T |
1715019 |
tcactagcgtcaagactagaactattgtattcgtgtttacttgtatatttatggcatgttctcaatattttagaatataccacaagtttaactaatattg |
1714920 |
T |
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| Q |
113 |
ttccggttgtagttaaattattattttttgttcaaattgg |
152 |
Q |
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| T |
1714919 |
ttccggttgtagttaaattattattttttggtcaaattgg |
1714880 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 1713433 - 1713386
Alignment:
| Q |
219 |
tgattgaatttatagcaatatgtgtaacatatattctccatgtggcct |
266 |
Q |
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| T |
1713433 |
tgattgaatttgtagcaatatttgtaacatatattctccatgtggcct |
1713386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 30016553 - 30016506
Alignment:
| Q |
219 |
tgattgaatttatagcaatatgtgtaacatatattctccatgtggcct |
266 |
Q |
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| T |
30016553 |
tgattgaatttgtagcaataggtgtaacatacattctccatgtagcct |
30016506 |
T |
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