View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_14 (Length: 242)
Name: NF10918_low_14
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33424727 - 33424950
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacga |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33424727 |
atcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacga |
33424826 |
T |
|
| Q |
101 |
gaagaagccatttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactttnnnnnnntgagtgtcaaaattttatttcctagaa |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33424827 |
gaagaagccatttgatcaaaatttgattttggaaaatatttctctctaaatgtagaaattaactttaaaaaaatgagtgtcaaaattttatttcctagaa |
33424926 |
T |
|
| Q |
201 |
taaaatctcaatcaaaggaatagc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
33424927 |
taaaatctcaatcaaaggaatagc |
33424950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33410812 - 33411025
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacga |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33410812 |
atcaacggtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatagaaaggatcaaaactacacga |
33410911 |
T |
|
| Q |
101 |
gaagaagccatttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactttnnnnnnntgagtgtcaaaattttatttcctagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33410912 |
gaagaagccatttgatcaaaatttgagtttggaaaatatttctct----------aaattaactttaaaaaaatgagtgtcaaaattttatttcctagaa |
33411001 |
T |
|
| Q |
201 |
taaaatctcaatcaaaggaatagc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33411002 |
taaaatctcaatcaaaggaatagc |
33411025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 33416656 - 33416823
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgca---attgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactaca |
97 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33416656 |
atcaacggtccaacccttgtcatcaccaacaatataatcagttgcagcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactaca |
33416755 |
T |
|
| Q |
98 |
cgagaagaagccatttgatcaaaatttgagtttggaaaatatttatctctaagtgtagaaattaactt |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
33416756 |
cgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctctaattgtagaaattaactt |
33416823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33436826 - 33436903
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaat |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| |||||||| ||||| |
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|
| T |
33436826 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcggctgccattgcaactgaagaaagcaaaaccattgaaat |
33436903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 33427669 - 33427546
Alignment:
| Q |
38 |
tcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaat |
137 |
Q |
| |
|
||||| || ||||||||||| |||| ||||||||| ||||| | |||||||| | |||||||||| ||||||||||||||||| ||||| || || |
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|
| T |
33427669 |
tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtttgaaatat |
33427572 |
T |
|
| Q |
138 |
atttatct-ctaagtgtagaaattaa |
162 |
Q |
| |
|
|||| ||| |||||| | |||||||| |
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|
| T |
33427571 |
atttctctcctaagtatggaaattaa |
33427546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24984794 - 24984670
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacga |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| |||||||| ||| ||||| ||||| ||||| |||||||||||||||| |||| | | | ||||| |
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| T |
24984794 |
atcaacggtccaacccttttcatcacccacaacgtgatcagctgccattgctactgaggaaagcaaaaccatggaaatggcaagg---tagattgcacga |
24984698 |
T |
|
| Q |
101 |
gaagaagccatttgatcaaaatttgagt |
128 |
Q |
| |
|
||| ||| ||||| |||||||||||||| |
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| T |
24984697 |
gaataagtcattttatcaaaatttgagt |
24984670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24990624 - 24990500
Alignment:
| Q |
1 |
atcaacagtccaacccttgtcatcaccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacga |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||| |||||||| ||| ||||| ||||| ||||| |||||||||||||||| |||| | | | ||||| |
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| T |
24990624 |
atcaacggtccaacccttttcatcacccacaacgtgatcagctgccattgctactgaggaaagcaaaaccatggaaatggcaagg---tagattgcacga |
24990528 |
T |
|
| Q |
101 |
gaagaagccatttgatcaaaatttgagt |
128 |
Q |
| |
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||| ||| ||||| |||||||||||||| |
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|
| T |
24990527 |
gaataagtcattttatcaaaatttgagt |
24990500 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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