View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_2 (Length: 614)
Name: NF10918_low_2
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Complemental strand, 25865838 - 25865252
Alignment:
| Q |
18 |
tgattgtcttattatttagctatttataaacttataactacaaattcaagtaggtttgtcctagatagtctagaatcaaagaatgcagtactcattttac |
117 |
Q |
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| T |
25865838 |
tgattgtcttattatttagctatttgtaaacttataactacaaattcaagtaggtttgtcctagatagtctagaatcaaagaatgcagtactcattttac |
25865739 |
T |
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| Q |
118 |
atgttta----tggacaaaattcaagtaaatttccttagatatttgatttgctgttctttccttaatatgttcgtaactgtcacaatttcctcaaaccca |
213 |
Q |
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| T |
25865738 |
atgtttacttatggacaaaattcaagtaaatttccttagatatttgatttgctgttctttccttaatatgttcgtaactgtcacgatttcctcaaaccca |
25865639 |
T |
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| Q |
214 |
taaatttctctacattttaggctgcaaaggaactgataaaggaaattggaatattagaactagaagtcgtgtatttggaacaatatctgctctctttgta |
313 |
Q |
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| T |
25865638 |
taattttctctacattttaggctgcaaaggaactgataaaggaaattggaatattagaactagaagtcgtgtatttggaacaatatctgctctctttata |
25865539 |
T |
|
| Q |
314 |
tcgaaaaagatttaacgaacacatttcttcactatcaaccaaagaaagaagattggaatcagcttcatacattaacaagagtacttctgcattaagtggc |
413 |
Q |
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| T |
25865538 |
tcgaaaaagatttaacgaacacatttcttcactatcaaccaaggaaagaagattggaatcagcttcatacattaacaagagtacttctgcattaagtggc |
25865439 |
T |
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| Q |
414 |
aatgattctatccctgacattcacaaaggagcttctgtagtacctcccagtggtgctttatctgacaaagaagtttcagttccatgctcaagcgaaatca |
513 |
Q |
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| T |
25865438 |
aatgattctatccctgacattcacaaaggagcttctgtagtacctcccagtggtgctttatctgacaaagaagtttcagttccatgctcaagcgaaatca |
25865339 |
T |
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| Q |
514 |
tttcaacaagtgatcaaggtggttttcatctcaaggaatgcaataaccagttagaaccagaatctgttttagactctagcattcatc |
600 |
Q |
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| T |
25865338 |
tttcaacaagtgatcaaggtggtttacaactcaaggaatgcaataaccagttagaaccagaatctgttttagactctagcattcatc |
25865252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 25868015 - 25867965
Alignment:
| Q |
20 |
attgtcttattatttagctatttataaacttataactacaaattcaagtag |
70 |
Q |
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||||||| ||||||||||||||| ||||||||| || |||||||| ||||| |
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| T |
25868015 |
attgtctgattatttagctatttgtaaacttatgacaacaaattctagtag |
25867965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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