View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_4 (Length: 408)
Name: NF10918_low_4
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 4191891 - 4191534
Alignment:
| Q |
19 |
ggatattgaataagttaactgatagcaagagagatcgtagtagatgtcatttctaagattttgatgacatcttgataacaatttttaattcgggtattca |
118 |
Q |
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| T |
4191891 |
ggatattgaataagttaactgatagcaagagagatcgtagtagatgtcatttctacgattttgatgacatcttgataacaatgtttaattcggatattca |
4191792 |
T |
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| Q |
119 |
gttagcattgttattctaaagaataagatggtctttttaattgcttattgtaaatgttaatgagtgactgttttctatctctagtgataaacctctctaa |
218 |
Q |
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| T |
4191791 |
gttagcattgttattctaaagaataagatggtctttttaattgct--ttgtaaatgttaatgagtgactgttttctctctctagtgataaacctctctaa |
4191694 |
T |
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| Q |
219 |
tgtgcttggtgacaaaactcatccgagaggagagaagaaccaaactgctaaatt-----------nnnnnnntgcattatattatgatatgtttttcatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
4191693 |
tgtgcttggtgacaaaactcatccgagaggagagaagaaccaaactgctaaattaaaaaataaaataaaaaatgcatta---tatgatatgtttttcatt |
4191597 |
T |
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| Q |
308 |
ttccacactaatcacctctcttttattagcaaaatgataaaactatctttagtgtcccgtatt |
370 |
Q |
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| T |
4191596 |
ttccacactaatcacctctcttttattagcaaaatgacaaaactatctttagtgtcccgtatt |
4191534 |
T |
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