View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_7 (Length: 375)
Name: NF10918_low_7
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 26880388 - 26880546
Alignment:
| Q |
19 |
agctaaagaagtagaacaaatt---tcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtga |
115 |
Q |
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| T |
26880388 |
agctaaagaagtagaacaaattatttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtga |
26880487 |
T |
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| Q |
116 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg |
174 |
Q |
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| T |
26880488 |
aactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatgactg |
26880546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 26880547 - 26880691
Alignment:
| Q |
222 |
cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
321 |
Q |
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| T |
26880547 |
cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
26880646 |
T |
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| Q |
322 |
aaaaattaagatggtaagagtttatggaaatgaacatacctatgc |
366 |
Q |
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| T |
26880647 |
gaaaattaagatggtaagagtttatggaaatgaacatacctatgc |
26880691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
| Q |
109 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga |
158 |
Q |
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| T |
40250196 |
atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga |
40250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
| Q |
109 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg |
170 |
Q |
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| T |
40707441 |
atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg |
40707502 |
T |
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