View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10918_low_9 (Length: 335)
Name: NF10918_low_9
Description: NF10918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10918_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 146 - 316
Target Start/End: Complemental strand, 11593291 - 11593121
Alignment:
| Q |
146 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaatcgtcaaaga |
245 |
Q |
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| T |
11593291 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaattgtcaaaga |
11593192 |
T |
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| Q |
246 |
aggacacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctg |
316 |
Q |
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| T |
11593191 |
aggtcacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctg |
11593121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 146 - 316
Target Start/End: Original strand, 11644828 - 11644998
Alignment:
| Q |
146 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaatcgtcaaaga |
245 |
Q |
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| T |
11644828 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaatccaaaacaacaaccaaacacaattgtcaaaga |
11644927 |
T |
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| Q |
246 |
aggacacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctg |
316 |
Q |
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| T |
11644928 |
aggtcacaaagttgttgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacctg |
11644998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 11644693 - 11644739
Alignment:
| Q |
11 |
cacagacaacgttgttacactcttcattcttaccacaacacaatcct |
57 |
Q |
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| T |
11644693 |
cacaaacaactttgttacactcttcattcttaccacaacacaatcct |
11644739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 34705219 - 34705153
Alignment:
| Q |
146 |
tgatgaaccttttagctttgagtttgttcataacttcactaacaacagcaagcattttctctccaaa |
212 |
Q |
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|||||||| ||||||||||||| |||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
34705219 |
tgatgaacattttagctttgagcctgttagtaacttcactcacagcagcaagcattttctctccaaa |
34705153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 39126935 - 39126987
Alignment:
| Q |
261 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
314 |
Q |
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| T |
39126935 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
39126987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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