View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_high_10 (Length: 338)
Name: NF10919_high_10
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 31015641 - 31015338
Alignment:
| Q |
20 |
aggagcaggacagttttcttcatagacatctaagttggatgcaataaaagacgaatttgagtacgagatgttttttactaataggtcataatttgaggtt |
119 |
Q |
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| T |
31015641 |
aggagcaggacagttttcttcatagacatctaagttggatgcaataaaagacgaatttgagtacgagatgttttttactaataggtcataatttgaggtt |
31015542 |
T |
|
| Q |
120 |
ttcagaattggattgttgttcatgcaagtgatctcaaattgtggatagccacaaaatgagtcttgttgaaaaggaatccagaaaggatactttatggaag |
219 |
Q |
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| T |
31015541 |
ttgagaattggattgttgttcatgcaagtgatctcaaattgtggatagccacaaaatgagtcttgttgaaaaggaatccagaaaggatactttatggaag |
31015442 |
T |
|
| Q |
220 |
gaccttttccacaggtttgaggtttgcatgcctcatattttggattaatagattgagcagtggtaactaagaataagacgatggtgataatgtttagttg |
319 |
Q |
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| T |
31015441 |
gaccttttccacaggtttgaggtgtgcatgcctcaaattttggattaatagattggacagtggtaactaagaataagatgatggtgataatgtttagttg |
31015342 |
T |
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| Q |
320 |
atgt |
323 |
Q |
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|||| |
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| T |
31015341 |
atgt |
31015338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 30951300 - 30951000
Alignment:
| Q |
20 |
aggagcaggacagttttcttcatagacatctaagttggatgcaataaaagacgaatttgagtacgagatgttttttactaataggtcataatttgaggtt |
119 |
Q |
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|||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||||||||| |
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| T |
30951300 |
aggagcaggacacttgtcttcatagacagctaagttggatgcaataaaagaagaatttgagtaagagatagtttttactataagatcataatttgaggtt |
30951201 |
T |
|
| Q |
120 |
ttcagaattggattgttgttcatgcaagtgatctcaaattgtggatagccacaaaatgagtcttgttgaaaaggaatccagaaaggatactttatggaag |
219 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| | |
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| T |
30951200 |
ttgagaattggattgttgttcttgcaagtgatctcaaattgtggatagccacaaaatgaatcttgttgataaggaatccagaagggatactttatggagg |
30951101 |
T |
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| Q |
220 |
gaccttttccacaggtttgaggtttgcatgcctcatattttggattaatagattgagcagtggtaactaagaataagacgatggtgataatgtttagttg |
319 |
Q |
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|||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
30951100 |
gaccttttccacaggtttgaggagtacatgcctcaaattttggattaccagattgagcagtggtaattaagaacaagataatggtgataatgtttagttg |
30951001 |
T |
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| Q |
320 |
a |
320 |
Q |
| |
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| |
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| T |
30951000 |
a |
30951000 |
T |
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