View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_high_14 (Length: 255)
Name: NF10919_high_14
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_high_14 |
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| [»] scaffold0190 (2 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 14058 - 13909
Alignment:
| Q |
17 |
aaagattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattagg |
116 |
Q |
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| T |
14058 |
aaagattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagctgtcggctccgattagg |
13959 |
T |
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| Q |
117 |
aggagtaggagtccacaggagtaggcttttttcattatgacatttgtaggtttt |
170 |
Q |
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| T |
13958 |
aggagtaggagtccacagga----gcttttttcattatgacatttgtagttttt |
13909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 12613 - 12673
Alignment:
| Q |
162 |
gtaggttttccagcttgtgtgggagggtggttttaattagctctatacttaatttgatccc |
222 |
Q |
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| T |
12613 |
gtaggttttccagcttgtgtgggagggtggttttaattagctctatacttaatttgatccc |
12673 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 2641135 - 2641207
Alignment:
| Q |
26 |
tgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggag |
98 |
Q |
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| T |
2641135 |
tgatgtgtattcaaatcttgttgttgtcggcgttatggagatcatccggcaacagtatcgtgtgctggaggag |
2641207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 26149051 - 26149155
Alignment:
| Q |
28 |
atgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggaggagtaggag |
127 |
Q |
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| T |
26149051 |
atgtgtattcaaatcatgttgttgaccgcgttatggagaccatccgacaatagtatcgtgtgttggaggaggtgccggctccgcggaggaagagtaggat |
26149150 |
T |
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| Q |
128 |
tccac |
132 |
Q |
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||||| |
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| T |
26149151 |
tccac |
26149155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 22009527 - 22009647
Alignment:
| Q |
20 |
gattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggagg |
119 |
Q |
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| T |
22009527 |
gattcctgacgtgtattcaaattctgctgttgcccgcattatggagaccatccgacaacaatatcgcgtgttggaggaggttccggctccgcggaggggt |
22009626 |
T |
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| Q |
120 |
agtaggagtccacaggagtag |
140 |
Q |
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| T |
22009627 |
agtaggagtccacgggagtag |
22009647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 22185702 - 22185822
Alignment:
| Q |
20 |
gattcttgatgtgtattcaaatcctgttgttgccggcattatggagcacatccgacaacagtatcgcgtgctagaggagcagtcggctccgattaggagg |
119 |
Q |
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||||| ||| || ||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||| | |||||| |||||||| ||| | |
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| T |
22185702 |
gattcctgacgtttattcaaatcctgttgttgcccgcattatggagaccattcgacaacaatatcgcgtgttggaggaggttccggctccgcggaggggt |
22185801 |
T |
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| Q |
120 |
agtaggagtccacaggagtag |
140 |
Q |
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| T |
22185802 |
agtaggagtccacgggagtag |
22185822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 43782384 - 43782328
Alignment:
| Q |
114 |
aggaggagtaggagtccacaggagtaggcttttttcattatgacatttgtaggtttt |
170 |
Q |
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| T |
43782384 |
aggaggagtaggagtccacgggagtagggttttggcattatgacttttgtagttttt |
43782328 |
T |
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