View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_high_2 (Length: 810)
Name: NF10919_high_2
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 401 - 810
Target Start/End: Complemental strand, 2497162 - 2496753
Alignment:
| Q |
401 |
aattcatttgttattcgccatcaaaaggttagtagaatactacttataattttattttatttaaaccatatactaacatcgtttctaacctaagtggaga |
500 |
Q |
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| T |
2497162 |
aattcatttgttattcgccatcaaaaggttagtagaatactacttataattttattttatttaaaccatatacaaacatcgtttctaacctaagtggaga |
2497063 |
T |
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| Q |
501 |
gctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatga |
600 |
Q |
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| T |
2497062 |
gctccttttggcaatgtttatcttaatggcaacgttagtcacaattccaagtcaaatttttagtctattacaatatttatgcattatctagctaggatga |
2496963 |
T |
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| Q |
601 |
atgattactttattttcccacgctgagatgacgtatgcgtaagatattatttgaaatatnnnnnnntgatttgatctatatatttaatctgcagataacc |
700 |
Q |
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| T |
2496962 |
atgattaatttattttcccacgctgagatgacgtatgcgtaagattttatttgaaatataaaaaaatgatttgatctatatatttaatctgcagataacc |
2496863 |
T |
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| Q |
701 |
cgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttctt |
800 |
Q |
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| T |
2496862 |
cgtgttgttttcagtttgttttaattattgattcacgccacaaatttctacatagattgttcaagtaagccagatatattggtgcatcatatatcttctt |
2496763 |
T |
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| Q |
801 |
catctcactc |
810 |
Q |
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| T |
2496762 |
cttctgactc |
2496753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 391
Target Start/End: Complemental strand, 2497612 - 2497223
Alignment:
| Q |
3 |
tttggctagtgtcgagctattaagtagtagtgttcaaggctgagatattctaatttgagaatttctttttccaccctcctt-gcgtcttcccgcgccctt |
101 |
Q |
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| T |
2497612 |
tttggctagtgtctagctattaattagtt---ttcaaggctgatatattctaatttgagaatttctttttccaccctccttagcgtctccccgcgccctt |
2497516 |
T |
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| Q |
102 |
aaaaatttcaaaaattcccttgaattttaggattttataatctaaaatgagtttttcctctattttcaaagtgtcaaaaattagacaccgtcgttttagc |
201 |
Q |
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| T |
2497515 |
aaaaatttcaaaaattcccttgaattttaggattttataatctaaaatgagtttttcctctattttcaaagtgtcaaaaattagacaccgtcgttttagc |
2497416 |
T |
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| Q |
202 |
cacggttcaaccgcgactaattgtttgnnnnnnncttcaccaattcgaattataaaatcggaaaagacaagcacctcagattttataatccgaatactcc |
301 |
Q |
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| T |
2497415 |
cacggttcatccgcgactaattgtttgtttttttcttcaccaattcgaattataaaatcggaaaagacaagcacctcagattttataatccgaatactcc |
2497316 |
T |
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| Q |
302 |
ctatacatgcttcgaacccatcttgtgc----nnnnnnnnnnntaatgagaaaaaatgtgtaatttaattttgataaatgtttgccaacacaag |
391 |
Q |
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| T |
2497315 |
ctatacatgcttcgaacccatcttgtgcaaaaaaaaataaaaataatgag-aaaaatgtgtaatttaattttgataaatgtttgccaacacaag |
2497223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 34684954 - 34684908
Alignment:
| Q |
111 |
aaaaattcccttgaattttaggattttataatctaaaatgagttttt |
157 |
Q |
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| T |
34684954 |
aaaatttcccttaaatttttggattctataatctaaaatgagttttt |
34684908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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