View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_high_3 (Length: 738)
Name: NF10919_high_3
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 654; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 16 - 723
Target Start/End: Complemental strand, 36083702 - 36082998
Alignment:
| Q |
16 |
agagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctctta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083702 |
agagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctctta |
36083603 |
T |
|
| Q |
116 |
atcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083602 |
atcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaag |
36083503 |
T |
|
| Q |
216 |
aagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagtgattctctgcctcctcctccaccaccaccatcaccaccatcgctgcatga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
36083502 |
aagaacactctccgaaacaaggacaagaagaagtacacatgaaggaaagtgattctctacctcctcctccaccaccacca---ccaccatcgctgcatga |
36083406 |
T |
|
| Q |
316 |
agtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatcttatgag |
415 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083405 |
agtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatcttatgag |
36083306 |
T |
|
| Q |
416 |
cgtttggaatacataggtgattcagttcttcacctaatgataacaacggaacaattttatgcatatccaacgctagcaccaggtcacttgacccgtttac |
515 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36083305 |
cgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcacttgacccgtttac |
36083206 |
T |
|
| Q |
516 |
gtgctgcaaatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggagacgaagt |
615 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083205 |
gtgctgcaaatgtcgacactgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggagacgaagt |
36083106 |
T |
|
| Q |
616 |
aagttctctctctcatgttatttatttacttgcagaaaaaatttgttacttttggcagaaaatattcaaagtaaaaaataaatttgccaatggtgacacc |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083105 |
aagttctctctctcatgttatttatttacttgcagaaaaaatttgttacttttggcagaaaatattcaaagtaaaaaataaatttgccaatggtgacacc |
36083006 |
T |
|
| Q |
716 |
aaataatt |
723 |
Q |
| |
|
|||||||| |
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|
| T |
36083005 |
aaataatt |
36082998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 309 - 622
Target Start/End: Complemental strand, 36149309 - 36148996
Alignment:
| Q |
309 |
tgcatgaagtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
408 |
Q |
| |
|
|||||||||| ||||| ||||| |||||| ||||||| |||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
36149309 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
36149210 |
T |
|
| Q |
409 |
ttatgagcgtttggaatacataggtgattcagttcttcacctaatgataacaacggaacaattttatgcatatccaacgctagcaccaggtcacttgacc |
508 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||| | ||||||||||| ||||||||||||||||||||| |
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| T |
36149209 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
36149110 |
T |
|
| Q |
509 |
cgtttacgtgctgcaaatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggag |
608 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||| || ||||| ||||||| ||||||||| |||| |||||||| || || ||||||| |
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| T |
36149109 |
cgtttacgtgctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggag |
36149010 |
T |
|
| Q |
609 |
acgaagtaagttct |
622 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
36149009 |
accaagtaagttct |
36148996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 66 - 294
Target Start/End: Complemental strand, 36149918 - 36149696
Alignment:
| Q |
66 |
ttgaagttgaagttcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaaga |
165 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| ||| || ||| || |||| | |||||| ||| ||||||| ||||||||||||| |||||| ||||| |
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|
| T |
36149918 |
ttgaagctgaagttcacaacaaagagcaagaaaaagcacctctacttttaactataccacatccgcacaccattgaagttcaagcacgcaaagacgaaga |
36149819 |
T |
|
| Q |
166 |
acaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagt |
265 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| || | || || ||||||| || ||||||| |||| |
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|
| T |
36149818 |
agaagcacttctcctccaaacatgtgcactcaaaatagatgagaaagaagaag---actctcccaagctag---aaaaagaagtgcaaatgaaggaaagt |
36149725 |
T |
|
| Q |
266 |
gattctctgcctcctcctccaccaccacc |
294 |
Q |
| |
|
||||||| ||||||| | ||||||||||| |
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| T |
36149724 |
gattctccgcctccttcaccaccaccacc |
36149696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 36149610 - 36149518
Alignment:
| Q |
185 |
acatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaaggtaagtgattctctgcctcct |
280 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| | ||||| || || |||||||| ||||||| |
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| T |
36149610 |
acatgtgcactcaaaatagatgacaaagaagaagaacactctcctaaaca---acaagaagaagttcccatgatggaaaatgattctccgcctcct |
36149518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 36149896 - 36149803
Alignment:
| Q |
16 |
agagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
112 |
Q |
| |
|
|||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| ||| ||| ||||||| ||||||||| |||||||||| |
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|
| T |
36149896 |
agagcaagaaaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 36160672 - 36160590
Alignment:
| Q |
135 |
ccatggaagttcaagcacacaaagaggaagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaa |
217 |
Q |
| |
|
||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||| |||||| ||||| | ||||||||||| |
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| T |
36160672 |
ccatggaagctcaagcatacaaagagcaagaagaagcacttctcatccaaacacttgcacttcaaatagacaacaaagaagaa |
36160590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 36149453 - 36149358
Alignment:
| Q |
162 |
aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaacaaggacaagaagaagtacacatgaagg |
260 |
Q |
| |
|
||||| ||||||| || |||||||||| ||||| |||||| | |||||||||||| |||||||| || ||||||||||||| || |||| |||||| |
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|
| T |
36149453 |
aagaagaagcactcatcatccaaacatgcgcactgaaaatagacgacaaagaagaa---cactctcctaatcaaggacaagaagtagcacacgtgaagg |
36149358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 619
Target Start/End: Complemental strand, 36173567 - 36173472
Alignment:
| Q |
524 |
aatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggagacgaagtaagt |
619 |
Q |
| |
|
||||||||| | ||||| || |||||||| || |||||| |||| || |||||||| ||||||||||||| || | |||||||| ||||||||| |
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|
| T |
36173567 |
aatgtggactctgaaaagctggcacgtgtggctatcaaacatggattggatcgttatttgcgtcacaaaaaacctcaacttggagaggaagtaagt |
36173472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 36083715 - 36083645
Alignment:
| Q |
75 |
aagttcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagtt |
145 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||| |||| | ||||| |||| ||||||| |||||| |
|
|
| T |
36083715 |
aagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagtt |
36083645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 294
Target Start/End: Original strand, 26527329 - 26527484
Alignment:
| Q |
139 |
ggaagttcaagcacacaaagagg------aagaacaagcacttctcctccaaacatgtgcactcaaaataaatgacaaagaagaagaacactctccgaaa |
232 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| || |
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| T |
26527329 |
ggaagttcaagcacacaaagaggtagaagaagaagaagcacttctcctccaaacatgtgcactcaaaatagatgaga---tagaagaacactctcccaag |
26527425 |
T |
|
| Q |
233 |
caaggacaagaagaagtacacatgaaggtaagtgattctctgcctcctcctccaccaccacc |
294 |
Q |
| |
|
| || || ||||||| |||||||| | |||||||| || ||||||| | |||| |||||| |
|
|
| T |
26527426 |
ctag---aaaaagaagtgcacatgaatgaaagtgattttccgcctccttcaccactaccacc |
26527484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 26527695 - 26527763
Alignment:
| Q |
310 |
gcatgaagtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactca |
378 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||| || |||| |||||| |||||||||||||||||||| |
|
|
| T |
26527695 |
gcatgaagtggaagccattcttgaatacgaattcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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