View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_high_4 (Length: 578)
Name: NF10919_high_4
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 13233993 - 13234559
Alignment:
| Q |
1 |
ccatgcttcccctggcatctacacatactcaagtgaaatccttccagcaacaccaacaccacatagcagcgactacgtagtcgacgagaatgactacctt |
100 |
Q |
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| T |
13233993 |
ccatgcttcccctggcatctacacatactcaagtgaaatccttccagcaacaccaacaccacatagcagtgactacgtagtcgacgagaatgactacctt |
13234092 |
T |
|
| Q |
101 |
acaccaaccaatagctcacaagaacatctaggtccaaagtttgcaaattcctacatagcagagacatggatcctaatgcgccgcaacttcaccaacatac |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13234093 |
acaccaacaaatagctcacaagaacatctaggtccaaagtttgcaaattcctacataggagagacatggatcctaatgcgccgcaacttcacaaacatac |
13234192 |
T |
|
| Q |
201 |
ggagaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaagg |
300 |
Q |
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| T |
13234193 |
ggagaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttacaagg |
13234292 |
T |
|
| Q |
301 |
aatcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgcggtccctgccttcatccaagagaggttcatcttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13234293 |
aatcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgccgtccctgccttcatccaagagaggttcatcttc |
13234392 |
T |
|
| Q |
401 |
atccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234393 |
atccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcctatg |
13234492 |
T |
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| Q |
501 |
ctgccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234493 |
ctgccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
13234559 |
T |
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