View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_low_10 (Length: 379)
Name: NF10919_low_10
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_10 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 6206 - 6547
Alignment:
| Q |
14 |
agatggatcatacagcagcatatacaacggaacaagnnnnnnncagaacaaatatgacagatgaatataacaacatgcttacttaagacataccaaatcc |
113 |
Q |
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| T |
6206 |
agatggatcatacagcagcatatacaacggaacaagaaaaaaacagaacaaatatgacagatgaatataacaacatgcttacttacgacataccaaatcc |
6305 |
T |
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| Q |
114 |
aatcaatgaaagagcttccttaaggcaatgtgatgcaccaattagcnnnnnnnnnnnnnnnntgtgatgcaccaaatcccaccttatccatattgtttta |
213 |
Q |
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| T |
6306 |
aatcaataaaagtgcttccttatggcaatgtgatgcaccaattagctttttcaaaaaaaaaatgtgatgcaccaaatcccaccttatccatattgtttta |
6405 |
T |
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| Q |
214 |
gcatcagtaacataaattgggcaatgcagccccttaaaaccaaagagatgattctaaatttctaaccccaccccaccccacaacttcaaagaatgataga |
313 |
Q |
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| T |
6406 |
gcatcagtaacataaattgggcaatgcagccccttaaaaccaaagagatgattctaaatttctaaccc-----caccccacaatttcaaagaatgataga |
6500 |
T |
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| Q |
314 |
aacatgtacaaaagatattcagaaaaactagatagggacaatatcgg |
360 |
Q |
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| T |
6501 |
aacatgtacaaaagatattcagaaaaactagatagggacaatatcgg |
6547 |
T |
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